| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1298 |
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| Symbol | |
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| ID | 5833930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 1440309 |
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| End bp | 1443644 |
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| Gene Length | 3336 bp |
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| Protein Length | 1111 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641367090 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001638770 |
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| Protein GI | 163850727 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.219097 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAAT CCAGGACCGC CAAGCCCCGA GACGATCAGG ATGCGAGCCC GGATGGGAGC
GTCGCCCCGC TCGTTCCGAC GGGAGCCCTG GCGGTGGCTC TGCTCGGTTT CGCGCAAGCC
GCGCGGCCGT TGATCCATGT GGCCCGCGAC GGGCGCCGCC TCGACGAGAT CGCCGCGGTC
CTGCTGGCAC TGGCGCCGGA GCGGACGGTG GCTGTTTATC CCGAATGGGA TTGCCTGCCT
TTCGACCGCG CTTCGCCCTC GCGCGGGGTC ATGGGCGCGC GCACCGGCGT GCTGCGCTGG
TTGACCGACG ACCGGGCACA GCCGGACATC GTCCTGACCA CCGCCCCCGC GCTGCTGCAG
CGCGTGCCCC CGCCGGAGAC GTGGGAATCG GCCCATATCG AGCTGCGCGT CGGCGAGCCG
CTCGATGCGG AGCAACTGAC GGCGCAACTG GCACGGCTCG GCTATATCCT CGACGATCGC
GTCGATGAGC CCGGCGAGGT GGCAGTCCGG GGACGGACTA TCGACGTATT CCCGGCCGCC
GCACCGCTTC CCTGCCGGGT CGAGCATGAC GGCGCGCGCA TCACCGCGAT CCGCTCCTAC
GATCCGGTGT CGCAGCGCTC GCGCGTCGAG ACCGAGCGGC TGGTGATCGA TCCGGCCACT
GAAATCATCC TGGACCCGGA TTCGGGCCTC GCCCTGGAGC CCTTCACCGG GCAGGAGCAC
CGGCTCGCCC GATTCTACCC CGCGCTCGTG ACGATGCTCG ATTACGTGCC CGAGGCGCGC
CTCGTGGTCG AGGCCGGGGT GGAGGAGCGG GCCGCGGCGT TCTTCGAGCA GATCGCCGAG
GGCCGCGAGG CGGAAGGGGC GATGTCACCT TCCGGTAGCC GACGGGACGA CCGATCCCAA
CAGACGCCCG CACCGGATCT CTATCTCGCG CCCAAGGAAT GGGCGAAACT ACTCGATGCA
CGCAGCCTCG CGGCGGCGAC GAGCGCCGAG GCGGAGCGGA TCGCAGGGCC GGTTTTCGTC
CGCGAGCGCC GCCCCGAGGC CGCCTTTGCC AAAGCCCTGC GCGCCGCGCT GAAAGTGGGC
GAGCGCGTCG TGCTCGCCGG CCCCAAGGCG CCGCTGCGCC GCCTCGTGCG GGCGGCCGCC
GCGGCCGACG AGCGAACCGT GCGCCTGATC GATGGCTGGG CCGAGGTCGA GGCGGCGGAG
CCCGGCGCGA TGCTGGCGAT CGAGATGCCG GTCGAAGCGG GGTTTCGCGT GCCGCAGGCC
GGGGCGACGG TGATCGCCGC GGCCGATCTG TTCGGGCCTT TGGCGGCGGG CGCGGGGCGG
CGGGCCGCCG TGCTGCCGAT CGGCGAGGTC GAGCTGCGGG TCGGCGACGT GTCGATCGAC
CGCGATCACG GCCTGTGCCT GTTCGAGGGG CTGGAGGCGA TCCGCGGTGG CGAAGAGGAC
GAGGAAGACG CCCTGCGCCT GCGTTTTGCC GATGATGCCA TCCTCATGGT GCCGGTGAGC
CAAGCGGACC GGATCTGGCG CTACGGCTCG GAGGCCGAAG CCGTGACCCT CGACCGGCTC
GACGGCGGCA CTTGGGCTCG GCGGCGCTTG GAAGCGGAGG CGACACTCGC CAAGGCGGCG
CGGGCGATGC TGAAGGCCGC GCAGGAGCGC CGGGAGGCCC ACGCCCCGCA GATCGTGCCG
CCCGAGCGCG AGATGGAGCG CTTCGCGGCC GGTTTCGGCT ATCCGCTCAC CGGCGATCAG
GCCGGGGCGG TGGAGGAGAC GTTGGCCGAC CTCGCCCGCG AGATGCCGAT GGACCGGCTC
GTCTGCGGCG ATGTCGGCTT CGGCAAGACC GAGGTGGCCC TGCGCGCCGC GGCGGCGGCG
ATCTTTGCCG GACGGCAGAT CGCCGTCATG GCGCCGACCA CGGTGCTGGT GCGCCAGCAT
GTCGAGACGT TCCGGCGCCG GTTTGCCCGG TTCGGCATCG AGGTGGCGCA TCTTTCGCGC
CTCGTCTCCC CCGCCGAGGC GAAGCGGGTG AAGCAGGGCT TGGCCGATGG CAGCGTCCGC
CTCGTCGTCG GCACCCAGGC GCTCGCCGGG CGCGGCGTAT CGTTCCACGA TCTCGGCCTT
GCCATCATCG ACGAGGAGCA GCGCTTCGGG GCCAAGACCA AGGCGAGCCT GCGCAAGGCG
GCGGGCGACG CCCATATCCT CACGCTAAGC GCGACGCCGA TCCCGCGCAC GCTCCAGGCG
GCGATGGTCG GCCTGCAGAG CCTCAGCGTG ATCGCCACGC CCCCGGCGGT GCGCCAGCCG
ATCCGCACGG TGATCGCCCC GTTCGAGGAG TCGACGCTGG CCGCGGCTTT GCGGCGCGAG
CACCGCCGCG GCGGACAGAG CTTCGTGGTC TGCCCGCGCA TCGAGGACAT CGCGCCGATG
GCCAAGCGTC TGCACGCGCT CGTGCCGGGG CTCGACGTGG TGACGGCGCA TGGCGAGATG
AAGCCCGCCG AGATGGACGA CGCGATGGTG CGCTTCGCCG ACGGCAACGG CGATGTGCTG
CTCGCCACCA GCATCATCGA GAGCGGGCTC GACGTGCCGC GCGCCAACAC CATGCTGGTC
TGGGACGCGG AGCGGTTCGG CCTCGCGCAA CTGCACCAGT TGCGCGGCCG CGTCGGGCGC
GGACAGCGGC GCGGGGTGGT GTACCTGTTC GGGCATCCCG ACAAGCCGCT CAGCCCCTCG
ACGGAGAAGC GGCTGCGCAC CCTGGAGGTG CTCGATCGGC TCGGAGCGGG CTTTGCCATC
TCCGCCCGCG ACCTCGACCT GCGCGGGGCG GGCGACCTCG TCGGCGACGA CCAATCCGGC
CACGTCAAGC TCGTGGGGCT CGGTCTCTAC CAGCATCTGC TGCAACTGGC GCTCCGCGCG
GCCAAGGGCG AGGCGGCCGA GGATTGGAGC CCGGAGGTGC GGATCGGCCT GAACGGCCGT
GTGCCGGCGG ACTACATCCC CGAGCCCGAA ATCCGCCTGA GCCTGTACAC GCGTCTCCTG
CGCCTGCGTG CCGAGGCCGA GATCGACGCG CTGCGCGACG AGATCGAGGA TCGCTTCGGG
CCCCTCCCGG AATCGGTGGA CGCGCTGTTC ACCCTGGCGC GCCTGCGGAT CGGCTGCCTC
GCCCTCGGCA TCGTCCGCCT CAGCGGCGGT CCTCAGGGGA TCGCGGCCGA TTTCCATCCG
GACCGGCACG CACCGGTGAT CCCGGTCTCC GAGGAGATCA CGGTTCGGGA TCGGCGCATC
GTCATCCGCG GGGGCTGCGA CGACGCGGTC GAGCGCGGCG CACGCGCCGC CGTTTTCCTG
CGCCGCCTCC AGGACGCCCG CGATCGGCGT GGCTGA
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| Protein sequence | MAQSRTAKPR DDQDASPDGS VAPLVPTGAL AVALLGFAQA ARPLIHVARD GRRLDEIAAV
LLALAPERTV AVYPEWDCLP FDRASPSRGV MGARTGVLRW LTDDRAQPDI VLTTAPALLQ
RVPPPETWES AHIELRVGEP LDAEQLTAQL ARLGYILDDR VDEPGEVAVR GRTIDVFPAA
APLPCRVEHD GARITAIRSY DPVSQRSRVE TERLVIDPAT EIILDPDSGL ALEPFTGQEH
RLARFYPALV TMLDYVPEAR LVVEAGVEER AAAFFEQIAE GREAEGAMSP SGSRRDDRSQ
QTPAPDLYLA PKEWAKLLDA RSLAAATSAE AERIAGPVFV RERRPEAAFA KALRAALKVG
ERVVLAGPKA PLRRLVRAAA AADERTVRLI DGWAEVEAAE PGAMLAIEMP VEAGFRVPQA
GATVIAAADL FGPLAAGAGR RAAVLPIGEV ELRVGDVSID RDHGLCLFEG LEAIRGGEED
EEDALRLRFA DDAILMVPVS QADRIWRYGS EAEAVTLDRL DGGTWARRRL EAEATLAKAA
RAMLKAAQER REAHAPQIVP PEREMERFAA GFGYPLTGDQ AGAVEETLAD LAREMPMDRL
VCGDVGFGKT EVALRAAAAA IFAGRQIAVM APTTVLVRQH VETFRRRFAR FGIEVAHLSR
LVSPAEAKRV KQGLADGSVR LVVGTQALAG RGVSFHDLGL AIIDEEQRFG AKTKASLRKA
AGDAHILTLS ATPIPRTLQA AMVGLQSLSV IATPPAVRQP IRTVIAPFEE STLAAALRRE
HRRGGQSFVV CPRIEDIAPM AKRLHALVPG LDVVTAHGEM KPAEMDDAMV RFADGNGDVL
LATSIIESGL DVPRANTMLV WDAERFGLAQ LHQLRGRVGR GQRRGVVYLF GHPDKPLSPS
TEKRLRTLEV LDRLGAGFAI SARDLDLRGA GDLVGDDQSG HVKLVGLGLY QHLLQLALRA
AKGEAAEDWS PEVRIGLNGR VPADYIPEPE IRLSLYTRLL RLRAEAEIDA LRDEIEDRFG
PLPESVDALF TLARLRIGCL ALGIVRLSGG PQGIAADFHP DRHAPVIPVS EEITVRDRRI
VIRGGCDDAV ERGARAAVFL RRLQDARDRR G
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