Gene Mext_1172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMext_1172 
Symbol 
ID5832448 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium extorquens PA1 
KingdomBacteria 
Replicon accessionNC_010172 
Strand
Start bp1291817 
End bp1292758 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content73% 
IMG OID641366965 
Productaliphatic sulfonate ABC transporter periplasmic ligand-binding protein 
Protein accessionYP_001638645 
Protein GI163850602 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID[TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0629619 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0181854 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCGCT GGCTCGTCCT GATCGCCCTG GCGCTCGCCA GCCTCGCGCC CGCCCGCGCG 
GAGGAGGTCT TGCGCGTCGG CGACCAGCGC GGCAACGCCC GCGCCCTGAT GGAGGCCACG
GGCGTGCTCG ACGGCCTCAC CTACCGGCTG GAATGGAGCG AGTTTCCGGC GGCCGCCCCG
CTGCTGGAAG CGCTGAATGC CGGCGTCATC GACGCGGGCG GCGTGGGCGA TGGCCCCTTC
ACCTTCGCGG CCGCCGCGGG GGTTCCGGTC AAGGCCTTTC TGGCCTTTCG CAACCGGCAG
GACGGGCTCG CCATCCTCGT GCGGCCCGAT TCCGCCATCC GCAGCGTGGC GGATCTCCAG
GGCAAGCGGA TCGCCACCAA CCGCGGCTCG ATCGGCCACC AGGTCGTCCT CGCCGCCCTC
GAAGAAGCAG GGCTGCCCGC CGACAGCGTG CAGTTTCGCT TCCTGCCGCC GGCCGACGCC
AAGTTGGCGC TGACTTCCGG CGCGGTCGAT GCGTGGTCGA CCTGGGAGCC CTACACCTCC
GCGGCCGAAC TCGCCGGCCT CGTCCGGGTG CTCCGCGACG GCAACGGCAT TACCCCGGGC
CTGAGCTACG CGGTGGCGAG CGACGCCGCG CTGAAATCCA AGCGCGCCCT GCTCGCCGAC
TACGCCGCCC GCCTCGCCAG GGCCCGAGCC CGGGCGCTGA CCGATCCGGC GCCCTATGCT
GCCGCGTGGT CGCGGCTGAT CGGCCTGCCC GAGGCGGTGC CTTTGCGCTG GTTCGGGCGC
GCGCGCTATC GCACCGTGCC GATCGATGAC ACCGTGATCG CCGACGAGCA GCGCATCATC
GACCTCTACG TGCGGGCCGG ACTGATCCCG GCGGCGCGGG CCCCGCGCGC CGAGGCGATC
CTCGATACCG GGTTTTCGGA CGCGCTTGCC GCCGTGCGAT GA
 
Protein sequence
MARWLVLIAL ALASLAPARA EEVLRVGDQR GNARALMEAT GVLDGLTYRL EWSEFPAAAP 
LLEALNAGVI DAGGVGDGPF TFAAAAGVPV KAFLAFRNRQ DGLAILVRPD SAIRSVADLQ
GKRIATNRGS IGHQVVLAAL EEAGLPADSV QFRFLPPADA KLALTSGAVD AWSTWEPYTS
AAELAGLVRV LRDGNGITPG LSYAVASDAA LKSKRALLAD YAARLARARA RALTDPAPYA
AAWSRLIGLP EAVPLRWFGR ARYRTVPIDD TVIADEQRII DLYVRAGLIP AARAPRAEAI
LDTGFSDALA AVR