| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_0700 |
|---|
| Symbol | |
|---|
| ID | 5831641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 759001 |
|---|
| End bp | 760947 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641366481 |
|---|
| Product | PAS sensor protein |
|---|
| Protein accession | YP_001638183 |
|---|
| Protein GI | 163850140 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.390085 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTGCGTGG TGGTGTTGCG TAAAGACGGT ACCCTTGCCT CTCTGTTCGA TTCCCGCCTG
GCCGGGCTGG TCCATGCCTC CGCGCTGGCC GAGCCGAGCG TGCGCTTCCG CCATGAGCGG
TTCCTGATCT CGCGGCTTGC CACCGGCGCC GTGATGATGG CGGGCCTGCC GCCCTATCTC
GTCTGGCGCG GCGTCCCGAG TGGCCTTGAG GCGATCGCCA TCGCGAGCCT GTTCCTGCCG
CTGCTGGCCG CCGTGGTCCT GTCGCGCACC GGCTCGCTCT GGGTCGCGCA TGCCTTGTCC
TCGCTCGGCC TAACCGGCAT CGTCGTCTGC CTCGCCGCAC TGACCGGCGG CGCGAGTTCG
GCCGCGGCCA TCTGGCTCGT GGCGGTGCCG CTGGAGGCGA TGGTCTCCGG CTCGCGCCGG
GCGACCATCG CCGCGTCCGT CATCGCCGTC GTCGGCGCCT TCGCGATCGC GCTGAGCGGT
TACCTGCCGG TCGGCGCTCT CGCGCTCGAT TGGCCCAACG CGATCGTCAT GCCGGTCTTT
GCCGTGACCG CCATCGGCCA CATCGCGGCG CAGGCGATGG AGCACATGCG CCGCGAGGGC
GAGTGGCGCG CCCGGATGCA GGACAACGAG GCCCGCGACC GCCTGCTGCT CTCGGCCATC
GACGACCTCG TCACCTGGCA CGACGCCAAC GGCCGCGTGC TGGAAGCGAG CGGCTCGGCC
GCCCGCTTCG TCGGCGCCGA GGCGAGCCGC CTGCGCGGCC ACGGCCTGCT CGACCGGGTG
CATATTGGCG ATCGTCCGGC CCTGCTCCAG GCGATCAGCG ACGTCGCCGC CCACGGCGCG
CCGGCGACGG TGCCGTTCCG CCTGCATCTC GACGCCGCCC GCGGCGACGG CAGCCGCACG
ATTTTCGCCG AGATGCGCGC CCACCGGATC GAGGCGGGGC TTGCCGGCGC CAACGGCTCG
ACCGTCGTCG CCGTGACCCG CGACGTGTCC GAGCATCGCC GCCACGCGCA GGAACTCGAC
CGCGCCCGCG CCGAGGCCGA GCGCGCCGAC GAGGTGAAGA CCCACTTCCT CGCGACCGTC
AGCCACGAGC TGCGCACGCC GCTCAACGCC ATCATCGGTT TCTCGGACGT GCTGGGCGGC
GAGGGCGCGA TGAGCCTCTC GCCGGAGCGG TCGCGCGAAT ATGCCGGCAT CATCGCCCAG
TCCGGGCGCC ACCTGCTCGA CGTGGTGAAC ACGCTGCTCG ATATCTCGCG CATCCGCGGC
GGGCATTTCG ACTTCCAGCC GGAGCCGGTC GATGTCGAGG CGCTGATCCG TGGCTGCTGC
GACCTGATGC GGCTCAAGGC CGATGCCTCC GGCATCGCCC TGACCAGCGC GCCCGTGCCC
GCCAGCTGCG CCCTCGTGGC CGATGCCCGC GCCTGCCGCC AGATGCTCAT CAACCTGATC
TCCAACGCCG TGAAGTTCAC GCCGCGCGGC GGGCGGGTGG AGGTGATGGT ACGCCGGGGC
GGGGCCTATC TCGATATCGT GGTGAGCGAT GACGGCATCG GCATCACCGA GGCCGACCTG
CCGCGGCTCG GCGACCCCTT CTTCCAGGTC GGCGGCGGCT ACGGCCGGAG CCACGAGGGT
ACCGGGCTCG GCCTCTCGGT GGTGCGCGGC CTCGCGGGGC TGCATGGCGG CGCCGTCTCG
GTCGAGAGCG CTCCCGGCAA GGGCACCGCC GTCACCGTGA CCCTGCCGCT CGATTGCAGC
CGCGCCAAAA CCGCTACGAC CGGTGCGCGG GACAATTCCG GCAACGGTGC GAAGGCTGCC
GCCGCGCAGG CCCAGCCGGC GCCGATCCGG ACCTCGGTGC GGGTCGCGGC GATGCCGGAG
CCAGTCCCTG AGCCGATCCG TCGGCCGGCC GGCCTGTTCG ATCCCGCCCC GCTCTCTACC
AACCCGCCGA TGCGCCGCGC CGGATGA
|
|---|
| Protein sequence | MCVVVLRKDG TLASLFDSRL AGLVHASALA EPSVRFRHER FLISRLATGA VMMAGLPPYL
VWRGVPSGLE AIAIASLFLP LLAAVVLSRT GSLWVAHALS SLGLTGIVVC LAALTGGASS
AAAIWLVAVP LEAMVSGSRR ATIAASVIAV VGAFAIALSG YLPVGALALD WPNAIVMPVF
AVTAIGHIAA QAMEHMRREG EWRARMQDNE ARDRLLLSAI DDLVTWHDAN GRVLEASGSA
ARFVGAEASR LRGHGLLDRV HIGDRPALLQ AISDVAAHGA PATVPFRLHL DAARGDGSRT
IFAEMRAHRI EAGLAGANGS TVVAVTRDVS EHRRHAQELD RARAEAERAD EVKTHFLATV
SHELRTPLNA IIGFSDVLGG EGAMSLSPER SREYAGIIAQ SGRHLLDVVN TLLDISRIRG
GHFDFQPEPV DVEALIRGCC DLMRLKADAS GIALTSAPVP ASCALVADAR ACRQMLINLI
SNAVKFTPRG GRVEVMVRRG GAYLDIVVSD DGIGITEADL PRLGDPFFQV GGGYGRSHEG
TGLGLSVVRG LAGLHGGAVS VESAPGKGTA VTVTLPLDCS RAKTATTGAR DNSGNGAKAA
AAQAQPAPIR TSVRVAAMPE PVPEPIRRPA GLFDPAPLST NPPMRRAG
|
|---|
| |