| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_0654 |
|---|
| Symbol | rimM |
|---|
| ID | 5834194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 712875 |
|---|
| End bp | 713546 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641366437 |
|---|
| Product | 16S rRNA-processing protein RimM |
|---|
| Protein accession | YP_001638139 |
|---|
| Protein GI | 163850096 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
|---|
| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0548885 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.131666 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGCC GCCCCGGATC CTCATCGCGC GGACCTGCGC GGTCCGACCG CCTCCCTGCG
GAGGCCGTCA CCTCGGCCCG TAAGCCGCAC GCCGCTGCAC CCACCCCGCC CGCCTCTCCC
GATCCGGGGC TTGTCCTGCT CGGCGAGTTC GGCCGGCCGC ACGGGTTGCA CGGCGAAGTC
CGGCTGAAAT CCCATACCAG CGAGCCCCTG GCGATCGCGG GCTACGGCCC GTTGCACGCC
TCCGACGGGC GCACCCTCGA ACTCGCCAAT GTCCGGCCCG CCGCCGGTAG CTCTCCCGAC
CTGCTGATCG TGCGGGTGAA GGGCGTGGAC GACCGCACCG GCGCCGAAGC CCTCAACCGC
GTCACCCTCG CCATCGCCCG CGAGCGTCTG GGCAAGGTGG AGGACGAGGA CGAGTTCTTC
CTCACCGACC TGATCGGCCT CACCGTCGAG GACGGCGCCG GGACGGTGAT CGGCACCATC
GTGGCGGTGC CGAATTTCGG TGGTGGCGAC CTGCTCGAGA TCCGCCCGGC GGCCGGCGGC
CCGACCGCGC TCCTGCCCTT CACCAAGGCG TTCGTGCCGA GCCTCGACAT CGCCGGCGGA
AAGGTCGTCG CCGACCCGCC CGACGATCTG TTCGCCCCGC CGGGGCCGAA GCCCGCCGAC
GATCCAGGCT GA
|
|---|
| Protein sequence | MARRPGSSSR GPARSDRLPA EAVTSARKPH AAAPTPPASP DPGLVLLGEF GRPHGLHGEV
RLKSHTSEPL AIAGYGPLHA SDGRTLELAN VRPAAGSSPD LLIVRVKGVD DRTGAEALNR
VTLAIARERL GKVEDEDEFF LTDLIGLTVE DGAGTVIGTI VAVPNFGGGD LLEIRPAAGG
PTALLPFTKA FVPSLDIAGG KVVADPPDDL FAPPGPKPAD DPG
|
|---|
| |