| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_0343 |
|---|
| Symbol | |
|---|
| ID | 5832886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 388520 |
|---|
| End bp | 390394 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641366128 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001637838 |
|---|
| Protein GI | 163849795 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGG GCGCGACCCG CCGAAGCGTC GTCCTCGGCA CCGGGGTGAT AGCGCTTGCG
GGCGCCCTGC CCCGTTCGGC CCGTGCCGAG GATGTCCACA AGGCTCATGG CGGGATTCAT
GGCCTATCGA GCTTCGGCGA GCTGAAATAC GCGCCCGACT TCCCGAACTT CGACTACGTG
AACCCGATGG CGCCGCGCGG CGGGCGCTTC TCGACAACTC TGGTCCAGAC CTTCGGCAAT
CAGGCGTTCG ACACCTTCGA CACGCTCAAC CCCTACGTCT TCCGCGGCAA CGGTGCGGCC
GGGATCAATC TCACCTTCGA CAGCCTGATG GTGCGCGCCC TCGACGAGCC GGACGCGCTC
TACGGCCTCG TCGCCCGCTC GGTCGAGATC AGCCCCGACG GCCTGACCTA TCGCTTCGCC
CTGCGTCCCC AGGCGCATTT CCACGACGGC TCACCCCTGA CCGCGCGGGA CGCGGCCTTC
TCCCTCACCA TCCTCAAGGA GAAGGGGCAC CCGACGATCG CCCAGGTGAT CCGCGACGTC
GCGGAGGCGA CGGCGGAGGG CGACGAGACC CTCGTCGTCC GCTTCGCCCC CGGCCGCAGC
CGCGACCTGC CGCTGATCGT CGCCGGACTG CCGATCTTCT CGGCGAAGTT CTTCGAAGGG
CGCGACTTCG AGGCCCAGAC TCTCAAGCCC CTGCTCGGCT CCGGCCCGTA TCAGGTCGGG
CGGATCGATA TCGGCCGCTT CATCGAACTG GAGCGTGTGA CCGATTACTG GGCGGCGGAT
CTTCCGGTGA TGGTCGGGCA AAACAACTTC GACCAGCTCC GCTACGAGTA TTTCCGCGAT
CGGCAGGTCG CCTTCGAGGC GTTCAAAGGC GGCGCCTACA CCTATCGCCA GGAATTCACC
TCGCGGATCT GGGCAACGGG CTACGACTTC CCCGCCGCGC GCGAGGGCCG CGTCAAGCGC
GAGACCCTGC CCGACACCTC GCCCGCCGCC ATCCAGGGCT GGTTCTTCAA CACCCGCCGC
GAGGTGTTCA AGGATCCGCG CGTGCGCGAG GCGATCGGCC TGTGCTTCGA CTTCCCCTGG
ACCAACCGCA CAGCGATGTT CGGCTCCTAC GAGCGCACCG TCTCGTTCTT CCAGAAGACC
GACCTGATGG CGACGGGCAA GCCCTCCGCG GAGGAGCTGG CCCTGCTCGA ACCCTTCAGC
GGGCAGGTGC CGGCCGAGGT GTTCGGCGAG GCCTGGACGC CGCCGGTTCC GGACGGCTCG
GGCCAGGACC GGGCGCTGCT CGCCCGCGCG GTGGCCCTGC TTAAGGAGGC GGGCTGCACC
CGCGAGGGCG GCGCCTTGCG GCTGCCGAGC GGCAAGCCGA TCGAGTTCGA ATTCCTCGAT
TCGGATTCCG TCTGGGAGCC GATCGTCCAG CCCTTCATCC GCAATCTCGG GTTGATCGGC
ATCAAGGCGC GCCAGCGGGC GGTCGATGCC GCGCAGTATC AGGCGCGGGT GCGCGACTTC
GACTTCGACA TCACCGCCCG CGCCGCCTCG GGCGACGCGA CGCCGGGGCC GGAGCTGCGC
GAGGCCTATG GCTCCCGCGC GGCGGCGATC CCCGGCTCCA ACAACCTCGC CGGCATCACC
GATCCGGTGA TCGACGCGCT GCTTGACCGC ATTGCCAACG CGGATTCGCG CGCGAGCCTC
ACCGTGGCCT GCCGCGCCCT CGACCGGGTG ATGCGGGCCG GCCGCTACTG GATCCCGATG
TGGTACTCGC CCGAGTACCG CCTCGCCCTG TGGGACATGT ACGGCCGCCC GGCGAAGCTG
CCGACCTATG GGCTCGGCGT GCCGGGCCTG TGGTGGTACG ACGAGGCCAA GGCGCGCCGG
ATCGGCCGGG GCTGA
|
|---|
| Protein sequence | MSAGATRRSV VLGTGVIALA GALPRSARAE DVHKAHGGIH GLSSFGELKY APDFPNFDYV
NPMAPRGGRF STTLVQTFGN QAFDTFDTLN PYVFRGNGAA GINLTFDSLM VRALDEPDAL
YGLVARSVEI SPDGLTYRFA LRPQAHFHDG SPLTARDAAF SLTILKEKGH PTIAQVIRDV
AEATAEGDET LVVRFAPGRS RDLPLIVAGL PIFSAKFFEG RDFEAQTLKP LLGSGPYQVG
RIDIGRFIEL ERVTDYWAAD LPVMVGQNNF DQLRYEYFRD RQVAFEAFKG GAYTYRQEFT
SRIWATGYDF PAAREGRVKR ETLPDTSPAA IQGWFFNTRR EVFKDPRVRE AIGLCFDFPW
TNRTAMFGSY ERTVSFFQKT DLMATGKPSA EELALLEPFS GQVPAEVFGE AWTPPVPDGS
GQDRALLARA VALLKEAGCT REGGALRLPS GKPIEFEFLD SDSVWEPIVQ PFIRNLGLIG
IKARQRAVDA AQYQARVRDF DFDITARAAS GDATPGPELR EAYGSRAAAI PGSNNLAGIT
DPVIDALLDR IANADSRASL TVACRALDRV MRAGRYWIPM WYSPEYRLAL WDMYGRPAKL
PTYGLGVPGL WWYDEAKARR IGRG
|
|---|
| |