| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_0136 |
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| Symbol | |
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| ID | 5834013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 146955 |
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| End bp | 151241 |
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| Gene Length | 4287 bp |
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| Protein Length | 1428 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641365920 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001637634 |
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| Protein GI | 163849591 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2203] FOG: GAF domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCCGT TGCACCCGAA CGAGGTGGAG CGCCTGCAGG CGCTGCACGA TCTGGAGGTG
TTCAGTTCGC CCGCGGAGCC GCAGTACGAC GCGATCTGCC GGACTGCGCA GGCACTGTTT
GGGGCCTCAA TTGCGCTGGT GTCGCTGGTC GGCGAGACCG AGCAGCGCTT TAAGGGCAGG
TGCGGTCTGA ACGTGAGCGG GACCTCGCGT GAAGTCTCGT TCTGCACCTA CACCATCCTC
TCGGATCAGG TGCTGTTGGT CGAGGACGCT CTCCAGGATG AGCGGTTTTC CGCCAACCCA
CTCGTCACAG GCGAGCCGCA CATCCGCTTC TACGCCGGCG CCCCCCTCGT GCTCGGAGCG
GGCATTCACC TTGGCTCGTT GTGCCTCATC GACCGGGTGC CGCGCTCCTT CTCAGCCGAG
CAGCAGGAGC AGCTACGAGA TCTGGCTCAG ATCGTTGTCG CTCAACTTCG CTTGAGCAAA
GCGGAGCGGA AGGCACGGGA GAGCGCTGAC GACTACCGCC TGCTCGCCGA CAACAGCAGT
GATCTGATCA TCCGCTCTGA TCTCGATGGC ACGCGCCGCT ACGTGTCGCC GGCGGTCAGC
CGGCTCCTTG GCTACGAGGC TCGCGAACTC CTCGGCACTC ACCCGCTCGC CTCTGTTCAC
CCAGATGAGG CAAGCAGCTA CGCGCAACTT CTGAAGCAGT TGGAGGCCGG CCAAATCAGT
GAGGCTGTGA CGCAGCAGCG CTACCGCCGC CGAGATAGCA GCTTCGTCTG GGTCGAGATC
TCCTTCAGCC TTACGCGCGA GGAGGAGACC GGCGGGCCGA ACGGCTATGT GGCCATCATT
CGTGACATCT CACAGCGGAA GGCTGTTGAG AGTGAAATGG CGCGCATCGC GCGTCATGAT
CCGCTTACCG GCCTGCCCAA CCGGCTTCAC TTCCGTGAGC AGCTTGAGCA GGAGATCGCG
CGCACGAAGC GAACGAGCAG CACGTTTGCC CTGCTGTGCC TGGATCTTGA CCGTTTCAAA
CTCGTCAATG ACACCCTCGG CCATCAGGCT GGCGACAGGT TGCTGAAGGT CGTGGCTCAG
CGGATCAAGT CGGTCCTGCG CACGGAGGAC ACGCTCGCGC GGCTTGGTGG CGACGAGTTC
GTCATCATCC AGACCAACTG CGCGCGCGCC GAGGATGCGA GCCGGCTTGC TGAGCGGGTG
ATCGCAGCGA TGCTGCCGCC GGTGGATCTC GGAGGTTACC CAGCTGGTGT GGGTGTAAGC
ATCGGCATTG CCTTAGCACC GCAGGACAGC CTCGATCACG ATCACCTCTA CGCGCTCGCC
GATCAGGCTC TCTACCGCGC CAAGGCCGCC GGCCGGAACA CGTTCCGGCT CTTCGCCGAG
GAAGAAGTCG GTTCTAGCGG TATGTCTAAC CAGGGCGGCG AGTGGGAGGT GGGCCAGCCG
CTCAGGCAGA TCGCGCCAGA CCCGCTGCTA GTGGGCGACC TCTTGCGCGA CATTTTAGAG
AGCAGCAGCG ATTGTATGAA GCTGCTCGAT CAGGAAGGAA ACCTGCTCTT CCTCAGCGCG
GGCGGACTGA AGGTGATGGA GATCGACGAT GTCGGGCCGT TCCTCGGCCA GTCGTGGGTC
GAGTTGTGGC AAGGCGAGCA CCAAGTCGCT GCGAAGGACG CGGTGTCGCA GGCGAGCCGC
GGTCAGGAGG CTCGCTTCCG CGGCTTCTGC CACACGGCCA AAGGCCGGCC GAGATGGTGG
GACGTGGCGC TCAGCCCAGT CAAGACTCTG AGCGGCGCGC GCGGTCTGAT CTTGGCGATC
TCGCGCGACG TCACGGTGCA GGTCGAGCTT GAGCGCGACC TGCAAACGAC GGCAAACCGC
TACAAGGCAC TCATCGAGGC GAGCGCGACC ATGGTCTGGC GTGCGACGCC AGACGGCTCT
CTCGTCGAAA GCAGCGGGTG GGGGACATAC ACTGGTCAGC CGGAAAGCGC CTACATTGGC
TACGGCTGGC TGGACACCGT TCATCCCGAT GACCGGCAGC GCGTGACCAC CACCTGGCGC
GAGATCTTCG CCTCGCAAGC GGCAGGCTCC TTCGAGTTCC GTGCGCTATG TCGAGACGGA
GCGTACCGGT GGACGTTGAC CAGGGCTGTG CCGCTCAAGG ACGCCTCTGG CCAGGTACAG
GAGTGGGTCG GCACCGATGG CGACATTCAC GAGAGCAGGC AAGCGAGTGA GGCCATCCGC
CTTCAGGAGG AACGCTACCG GCTGGCTATG CTCGCCACAC AAGATGCAAT TTGGGACTGG
GATCTAGGCG CGGACACCGC TGAGTGGAGC GATGGCGCTT ACCGTCTGTT CGGCTACGAT
GACGCTGAGA GGGCCGATAC AGGAGCTTGG TGGAAGAGCA AGATCCACCC TGATGACCGG
GAGCGTGTCA CAACCTCCAT CAAACACATC ATCGAAAGCC AAGAGCACCG CTGGAGCGAT
GAGTACCGCT TCGCCCGTGC TGACGGCAGC TACGCCGAGG TAACCGACTG TGGGTTCGTG
ATCCGCGACA CAGAGGGACA AGCCTTGCGG ATGGTTGGAG CCTTGCGCGA CATCAGTGAG
CAGCGTCGGG CCAATGCAGC ACTCCGAGCC AGCGAGGAGC GCCTGCGGCT TGCTCTGCAG
GCAGGGCGAA TGGTTGCATG GGAGCGTGAC CTCAAGACCG GCTTGGCCAC ACGTTCGGAC
AACGCGCTGC AGTTGCTTGG TATCGGCTCC GGCCCGATTT CGCTTCTGCT CGACAATGTC
CACCCAGAGG ACCGGGCACA TGTCGAACGG TTCACGGCCT ACGGCGGCGC ACTGAGTACT
GTCGAGTTCC GCTACCTGCA CCCTGCAGGG CCGCAAATTT GGCTAACCAT GCGCGCCGAG
CGTGTTGAGG CTGGCCGGAT CGTCGGCATC ACCTTCGACA TCACCGAGCG CAAGCTGTCC
GAGGAGCAGG CCTGGCGCGC AGCTAACCAT GACGCTCTCA CAGGGCTGCC GAACCGCAGG
CTGTTCCACC AGCGGCTGGA GCAGGCGCTT GCTGCTGCCG AGCGGGGTGG CACGAGTGTG
ACCCTTCTCC TGGTTGACCT CGACACGCTG CGGGATGTGA ACGACATCCA TGGGCATGAC
GCAGGCGATG CGGTGCTGCG CGAAGTGTCA AGCCGCCTAG TCGAGGGGTT GCGCGCGTCA
GACACGGTCG CTCGCCTCGG CGGTGACGAG TTCGCCCTGC TCCTGACCGA GCCGCTGCGC
CTGGAACACG CCGCCAAGCA CGCTGAGGTG CTGCTGGAGC GCTTGCGGCA ACCTCTCGTC
TATCGCGGCC ACCGGCTGAC CTGCACTGCG AGCATTGGCT TGGCGGCATA TCCTGATCAC
CACCGCAATC CGTATGACCT TCTCAAGGAC GCCGACATCG CTCTCTACCG TGCCAAAGCA
CAGGGGCGGA ACAGCGCGGT CGTGTTTGCA GCAGAGATGC GTTCCCAGAC TGAGCGGCGG
GTGCTGATCG CGGCCGAAGT ACGGACCGCT GTCGCTGCAG GCCAGATCGT CCCCTACTAT
CAGCCGAAGA TATGTTTCAC GACTGGCGCG ATCGTCGGCT TCGAGGCGCT CGCACGTTGG
CAGCACCCTG AGAAGGGCCT GCTAACCCCC GGCTACTTCG GCTCAGCGTT CGAGAACCCA
GAGCTTGCAA CAGCCATCGG CAGCAGCCTG ATCCGGCAAG TCGCGGCAGA TCTAGGTCAA
TGGTGTCGGT GCGGCCTCGA CCCTGGTCGC GTCGCCGTTA ACTTTTCATC GGCTGAGTTC
CGCAGACCGG ATTTGGCTGG CGACATCCTC TCGGTTCTGA GCGAGCACGA TGTGCCGCCC
GCTCGGTTCG AGGTGGAGGT GACCGAGACG GTGTTCCTGG GGCATGGCAC CGAGGTTGTG
CCCGCAACGC TTCGGCGCCT GCATGACAAC GGCATCCTGA TTACGTTGGA CGACTTCGGC
ACTGGCTTTG CCTCGCTCAC CCATCTGAAG CAGTTCCCGG TCGGGCACAT CAAGGTGGAT
CAGAGCTTCG TACGCAACGT GGTGCAGGAT CAGGGGGATG CGGCCATTAT CACGGCGGTG
ATTGGCCTCG GTCGCAGCCT CGGGATGCAG GTCACCGCTG AAGGTGTCGA GACGGTGGTG
CAAGCCAACC GGCTGAGCGC CATGGGCTGC GACTACGCTC AGGGCTACCT CTACGGCAAA
CCGATGGCCG GCTCACGTGT GCCTTGGTTC CTGCGGAATT GGAGTGGTGA GGCCGTTGAG
AGCAGTCGAG TTCTGCGGCT TGCTTGA
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| Protein sequence | MYPLHPNEVE RLQALHDLEV FSSPAEPQYD AICRTAQALF GASIALVSLV GETEQRFKGR
CGLNVSGTSR EVSFCTYTIL SDQVLLVEDA LQDERFSANP LVTGEPHIRF YAGAPLVLGA
GIHLGSLCLI DRVPRSFSAE QQEQLRDLAQ IVVAQLRLSK AERKARESAD DYRLLADNSS
DLIIRSDLDG TRRYVSPAVS RLLGYEAREL LGTHPLASVH PDEASSYAQL LKQLEAGQIS
EAVTQQRYRR RDSSFVWVEI SFSLTREEET GGPNGYVAII RDISQRKAVE SEMARIARHD
PLTGLPNRLH FREQLEQEIA RTKRTSSTFA LLCLDLDRFK LVNDTLGHQA GDRLLKVVAQ
RIKSVLRTED TLARLGGDEF VIIQTNCARA EDASRLAERV IAAMLPPVDL GGYPAGVGVS
IGIALAPQDS LDHDHLYALA DQALYRAKAA GRNTFRLFAE EEVGSSGMSN QGGEWEVGQP
LRQIAPDPLL VGDLLRDILE SSSDCMKLLD QEGNLLFLSA GGLKVMEIDD VGPFLGQSWV
ELWQGEHQVA AKDAVSQASR GQEARFRGFC HTAKGRPRWW DVALSPVKTL SGARGLILAI
SRDVTVQVEL ERDLQTTANR YKALIEASAT MVWRATPDGS LVESSGWGTY TGQPESAYIG
YGWLDTVHPD DRQRVTTTWR EIFASQAAGS FEFRALCRDG AYRWTLTRAV PLKDASGQVQ
EWVGTDGDIH ESRQASEAIR LQEERYRLAM LATQDAIWDW DLGADTAEWS DGAYRLFGYD
DAERADTGAW WKSKIHPDDR ERVTTSIKHI IESQEHRWSD EYRFARADGS YAEVTDCGFV
IRDTEGQALR MVGALRDISE QRRANAALRA SEERLRLALQ AGRMVAWERD LKTGLATRSD
NALQLLGIGS GPISLLLDNV HPEDRAHVER FTAYGGALST VEFRYLHPAG PQIWLTMRAE
RVEAGRIVGI TFDITERKLS EEQAWRAANH DALTGLPNRR LFHQRLEQAL AAAERGGTSV
TLLLVDLDTL RDVNDIHGHD AGDAVLREVS SRLVEGLRAS DTVARLGGDE FALLLTEPLR
LEHAAKHAEV LLERLRQPLV YRGHRLTCTA SIGLAAYPDH HRNPYDLLKD ADIALYRAKA
QGRNSAVVFA AEMRSQTERR VLIAAEVRTA VAAGQIVPYY QPKICFTTGA IVGFEALARW
QHPEKGLLTP GYFGSAFENP ELATAIGSSL IRQVAADLGQ WCRCGLDPGR VAVNFSSAEF
RRPDLAGDIL SVLSEHDVPP ARFEVEVTET VFLGHGTEVV PATLRRLHDN GILITLDDFG
TGFASLTHLK QFPVGHIKVD QSFVRNVVQD QGDAAIITAV IGLGRSLGMQ VTAEGVETVV
QANRLSAMGC DYAQGYLYGK PMAGSRVPWF LRNWSGEAVE SSRVLRLA
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