Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpAngola_A4063 |
Symbol | kdgM1 |
ID | 5802542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pestis Angola |
Kingdom | Bacteria |
Replicon accession | NC_010159 |
Strand | + |
Start bp | 4326532 |
End bp | 4327236 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 641341844 |
Product | oligogalacturonate-specific porin protein KdgM |
Protein accession | YP_001608350 |
Protein GI | 162421260 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.884359 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 0.87941 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATTA AATTATTGTC TCTGGCAGTG GCATCACTCA TTAGTACCAG CGCAGTGGCA GTCACTATTG ACTATCGTCA TGAAATGCAA GATCAAAGTG GTAACACTCA CAAAGATAGG TTATTAATGT CCCACCGCTT TGCTAATGGC TTTGGATTAT CTTTGGAAGG CAAGTGGAAA GGCGCTCAGG ATAAGGATAA ACCCTTCAAT GAAACCGTCA GTAATGGCAC TGAAGTTGTT GCCAGCTATG TGTATAAAAT TAATAACACA TTCTCTATTG AGCCGGGATT CTCATTAGAT TCAAACTCTA CGTCTAACAA TTATCGCCCT TATCTGCGTG GCAAGGCAGT TATCGTTGAT GATCTCTCCG TTTCATTGCG TTATCGCCCT TATTATAAAC GTACCAGTGC GAATATTAAT ACGCCAAAAG ACACCTCTGA AAATGGCTAT AACCTGACGA GTGTCATTAG TTATAAAATT GCTAAAGATT ATCAATTAGA TTATGAAATC GATTACAAGC AGGCAAATAA AGCCGGTGTT GTGTTAGCTG ATAAAGAAAA CTACGATTGG AGCCACGATC TTAAATTAAC GTACAAGTGG GATAAGAATT GGTCTCCTTA TATGGCACTC GGTAATGTTT CTGGTAGCAA AAATACCGAT GAGCGCCAAA CACGTTATCG CGTAGGGGTA AAATATAGCT TCTAA
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Protein sequence | MNIKLLSLAV ASLISTSAVA VTIDYRHEMQ DQSGNTHKDR LLMSHRFANG FGLSLEGKWK GAQDKDKPFN ETVSNGTEVV ASYVYKINNT FSIEPGFSLD SNSTSNNYRP YLRGKAVIVD DLSVSLRYRP YYKRTSANIN TPKDTSENGY NLTSVISYKI AKDYQLDYEI DYKQANKAGV VLADKENYDW SHDLKLTYKW DKNWSPYMAL GNVSGSKNTD ERQTRYRVGV KYSF
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