Gene YpAngola_A3880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpAngola_A3880 
SymbolrbsC1 
ID5802358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pestis Angola 
KingdomBacteria 
Replicon accessionNC_010159 
Strand
Start bp4113812 
End bp4114816 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content49% 
IMG OID641341672 
Productsugar transport system permease 
Protein accessionYP_001608182 
Protein GI162419041 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.0490565 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCTGA CACGGACCAG TAAATTCAGG AAGGCCATTC ATCAATACGG GATCATACTT 
GCCTTTGTTG GCTTGTGTGC GGTCATTGCT CTGGCTGGTG AATTTGCAGT AAACAGCGGG
ACATGGAGCG AGAATTATTT TTTATCACGG GATAATACAC TCATTATTCT GCGCCAGGTC
TCGATCAACG GCATCCTGGC CATTGGGATG ACGTTCGTTA TTATCACCGC GGGTGTTGAT
CTCTCCGTTG GCGCGGTTTT AGGCTTGGCC GGTATTGTCG CCGCGCGTTT TGCGACGAAT
AACAGTGCCA TCGCCTTAGG GGGGACCGAT TGGCCACTGT TAGTACCCAT CGTGATTGCC
ATTGGCATCG GTTTAGTCTG CGGCGCTATC AATGGCTTTA TCTTAGGCAA ATATCGTCTG
CAACCCTTTA TTGTCACAAT GGGGATGTTA TCTGTCGCCC GTGGCCTGAC ATTACTGACT
ACTGGCGGAA ACCCGGTATC ACAATTAACC GATGAATTCC GTTGGTTAGG TAACGGTTAT
ATTTTGGGTA TTCCCGTACC GGTGTTGATC TTTATTATTC TGTTCGCCAT TGCCTGGTTT
GTCTTGAATA AGATGACGTT TGGCCGTTAC GTCTACGCGG TGGGCGGGAA TGAAAAAAGT
GCCCGCACAT CCGGGATCAA CGTATTACGT ATTAAAGTGG CGGTATATAC CCTTTGCGGT
ATTTTGGCGG CGATCGCGGG TTTAATTTTA ACCGCACGTA CTGGCTCGGC ACAAACTGGC
GCTGGCGTAT CCTATGAATT GGATGCTATC GCGGCGGTCG TTATTGGCGG CACCAGTATG
GCTGGCGGTA TTGGAACTCT GCGCGGAACC TTATTTGGTG TGCTGATAAT AGGTGTGATG
AACAATGGGC TTGATTTACT CGGCGTACAA TCCTATTACC AGCAAATTAT CAAAGGTGTT
CTGATTGTCT TTGCTGTCAT GCTTGACCCA TCCCGTAAGC AATAA
 
Protein sequence
MSLTRTSKFR KAIHQYGIIL AFVGLCAVIA LAGEFAVNSG TWSENYFLSR DNTLIILRQV 
SINGILAIGM TFVIITAGVD LSVGAVLGLA GIVAARFATN NSAIALGGTD WPLLVPIVIA
IGIGLVCGAI NGFILGKYRL QPFIVTMGML SVARGLTLLT TGGNPVSQLT DEFRWLGNGY
ILGIPVPVLI FIILFAIAWF VLNKMTFGRY VYAVGGNEKS ARTSGINVLR IKVAVYTLCG
ILAAIAGLIL TARTGSAQTG AGVSYELDAI AAVVIGGTSM AGGIGTLRGT LFGVLIIGVM
NNGLDLLGVQ SYYQQIIKGV LIVFAVMLDP SRKQ