Gene YpAngola_A3838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpAngola_A3838 
Symbol 
ID5802316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pestis Angola 
KingdomBacteria 
Replicon accessionNC_010159 
Strand
Start bp4075751 
End bp4076452 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content50% 
IMG OID641341634 
Producthemolysin III family protein 
Protein accessionYP_001608145 
Protein GI162418903 
COG category[R] General function prediction only 
COG ID[COG1272] Predicted membrane protein, hemolysin III homolog 
TIGRFAM ID[TIGR01065] channel protein, hemolysin III family 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.69609 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAGAATA AATCAGGGAC ACAACCTCTC TTTGCAACAC CATCCGTACC CGCCGCACAA 
ACGGCCACCC CAACCCCGGC TTACCCGTGG GCTGAAGAGC TGGCGAACAG CCTCAGCCAT
GGTATCGGTG TGGTGTTCGG TATTGTGGGG CTGGTATTGC TACTGGTTCA GGCGGTGAAC
AGTGGTGCCG ATACCAAAGC GCTCACTAGC TATAGTTTGT ACGGTAGCAG TATCATTTTG
TTGTTTTTGG CCTCTACGCT GTATCACGCC ATTCCACATC GTAGGGCGAA GCTCTGGCTG
CAAAAATTTG ATCACTGCGC TATCTACATC TTGATTGCCG GGACTTATAC GCCGTTCTTA
TTAGTAGGGC TAGATTCGCC TCTGGCCAGA GGTTTGATGG CGGTTATTTG GGGGCTGGCA
CTCATCGGTG TGATCTTTAA GTTGGCGTTT GCTCATCGTT TTGAAGTGTT GTCACTGGTG
ACCTATCTGA CCATGGGGTG GTTATCGCTG ATTGTCATTT ATCAGCTCGC GGTCAAGCTT
GAGATCGGGG GGTTGGCACT GCTGGCGATA GGGGGCTTGT TATATACGGT TGGGGTGATC
TTCTATGCAT CGAAACGTAT CCGTTTTGGT CATGCTATCT GGCACGGTTT TGTGTTAGGC
GGCAGTGTCT GCCATTTTAT GGCGATCTAT CTATATGTTT AA
 
Protein sequence
MKNKSGTQPL FATPSVPAAQ TATPTPAYPW AEELANSLSH GIGVVFGIVG LVLLLVQAVN 
SGADTKALTS YSLYGSSIIL LFLASTLYHA IPHRRAKLWL QKFDHCAIYI LIAGTYTPFL
LVGLDSPLAR GLMAVIWGLA LIGVIFKLAF AHRFEVLSLV TYLTMGWLSL IVIYQLAVKL
EIGGLALLAI GGLLYTVGVI FYASKRIRFG HAIWHGFVLG GSVCHFMAIY LYV