| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A3569 |
|---|
| Symbol | chbC |
|---|
| ID | 5802045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | + |
|---|
| Start bp | 3789213 |
|---|
| End bp | 3790574 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641341382 |
|---|
| Product | PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC |
|---|
| Protein accession | YP_001607895 |
|---|
| Protein GI | 162421911 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
|---|
| TIGRFAM ID | [TIGR00359] phosphotransferase system, cellobiose specific, IIC component
[TIGR00410] PTS system, lactose/cellobiose family IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000103211 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACAT TTATTACGTC GTTGGAGAAG GTCATATTAC CCTTCGCCAT TAGAATTGGC
AGGCAGCAAC ACGTTAATGC CATCAAGAAC GGGTTTATCC GGCTGATGCC ATTAACCCTG
ACTGGGGCCA TGTTTGTTCT AATTAATAAT GTTTTCTTAA GTTTCGGTGA AGGGTCGTTC
TTCTTTTCAA TGGGTGTGCG ATTAGACGGC GATACCATTA CCATGCTAAA TGGTTGGAAA
GCCATCGGTG GTAACGTTTA TAACGGAACG CTCGGGATAA TGTCGTTAAT GACGCCATTC
TTTATCAGTA TGGCACTGGC CGAAGAGAAG AAGGTGGATC CACTCTCTGC CGCCTTACTG
GCCATCGCAG CCTTTATGAC CGTGACCCCG TTCAGTGTTG GCGAGGCCTA TGCGGTTGGT
GCCAATTGGC TCGGGGGGGC CAATATCATC TCGGGTATCA TCATCGGTCT GGTGGTGGCT
GAAGTATTCA CTTTCATTGT CCGACGTAAT TGGATTATCC GTCTGCCAGA TAGTGTACCC
ACTTCGGTTT CCCGTTCTTT CTCGGCATTG ATTCCTGGCT TTATCATTCT TTCCATCATG
GGCCTGATTT CATACACTCT GGCGCTATAT GGTACTAATT TCCATCAGAT CATTATCGAT
TCCATCTCCG CCCCGCTGTC GAAAATGGGC AGTGTCGTGG GGTGGGTGTA TGTGATGTTC
TCCTCTCTGC TGTGGTTCTT CGGTGTACAT GGTGCCATGG CCTTGTCTGC GCTGGAAAGT
GGCATCATGA TGCCGTTCGC GTTGGAAAAC GTGGCAACCT ATACCCAATA TGGTTCGGTT
GAGGCCGCAC TGGCTGCGGG TAAAGAGTTC CATATGTGGG CGAAACCGTT TGTCGATTCC
TACATCTTCT TGGGCGGAAC CGGTGCAACG TTGGGGCTTA TTATTGCCAT CTTTATTGCT
TCTCGCCGTG AAGATTATCG GCAGGTTGCG AAGCTGGCTG CTCCGGCGAG TATTTTCCAG
ATCAACGAAC CAATCCTGTT TGGCTTACCG GTCATTATGA ACCCACTCAT GTTTATTCCG
TTTATCATGG TTCAGCCGAT ATTAGCCATT ATCACGTCAG TAGCTTATTA CAGTGGCCTT
ATTCCTCCGA TCACCAATAT TGCTCCGTGG ACTATGCCCG CCGGGCTAGG TGCATTCTTT
AACACCAATG GTAGCATTGC TGCATTATTA TTAAGTTTGT TCAACTTGGG CGTGGCAACA
CTGGTTTATC TCCCGTTCGT GATTATTGCC AATAAAGCAC AGGGCGAGAT CGACCGTACT
GTCGAAAGCG AAGACGATAT TGCTAACAGC CTGAAATTCT AA
|
|---|
| Protein sequence | MSTFITSLEK VILPFAIRIG RQQHVNAIKN GFIRLMPLTL TGAMFVLINN VFLSFGEGSF
FFSMGVRLDG DTITMLNGWK AIGGNVYNGT LGIMSLMTPF FISMALAEEK KVDPLSAALL
AIAAFMTVTP FSVGEAYAVG ANWLGGANII SGIIIGLVVA EVFTFIVRRN WIIRLPDSVP
TSVSRSFSAL IPGFIILSIM GLISYTLALY GTNFHQIIID SISAPLSKMG SVVGWVYVMF
SSLLWFFGVH GAMALSALES GIMMPFALEN VATYTQYGSV EAALAAGKEF HMWAKPFVDS
YIFLGGTGAT LGLIIAIFIA SRREDYRQVA KLAAPASIFQ INEPILFGLP VIMNPLMFIP
FIMVQPILAI ITSVAYYSGL IPPITNIAPW TMPAGLGAFF NTNGSIAALL LSLFNLGVAT
LVYLPFVIIA NKAQGEIDRT VESEDDIANS LKF
|
|---|
| |