| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A3513 |
|---|
| Symbol | |
|---|
| ID | 5801989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | + |
|---|
| Start bp | 3729458 |
|---|
| End bp | 3733264 |
|---|
| Gene Length | 3807 bp |
|---|
| Protein Length | 1268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641341330 |
|---|
| Product | outer membrane autotransporter |
|---|
| Protein accession | YP_001607843 |
|---|
| Protein GI | 162418506 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.273383 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.696988 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAC ATTTCAGACT GGGTCTTTTT ACCGCAAATG TTCAGGCGGA TACAGGGAGC
CAACACTCCT TTAGCCGTGT TCCAGCAGCC GCGATTAATC CCATAACATT AGCGATTGTT
GTGGCGTTTT CTACTATTGC TTTACCACCA ATGGCATTAG CAGCATGCAC CAGCCCCGGG
GTGGGAACCT ATGTCTGCGA AGGTGAAAAT ACCGACGGCA TCATCCTGAG CGGCACGGAT
ATTGCGGTTG AGACCCAACC TGGTTTCAGC ATAATAGTTC CTGAAAATGG AGACCCTGCA
CTCTCGCTAG TCGGTTCTGG CACCATCAGC TACCTTGATA CCAACAGTTC TGCGCTTGAT
ACCACGGGTG CCGATTCTTT GTATATCCAG AATGATACGC ACACCACTGG GCAATCGTCG
TCCATTAATG TTCAGACAAA CGGTTCAATG GGTAGCGGTA TCAATATTAG CAACCATAGC
GGTGCCGACT CGACAGTACA GGTGGATGTT TCCGGCACAT TATTTGGTGA TCTAAATGGT
TCTCCCGCCC TTTTAATCTA TTCATCGGCG GAGAATAATT CCACTATTCT CATGAATATC
AATACTATTT TCGGCGACGT GGGTATTCGA AGCGATAACA CTTCATTCAA TGGAACAGCC
ATCACTAACG TTGATATTGC TAATGATATT AATGCTACAT ATTCGGGTGC CACTATCAAC
AACAGCGGTA GCGGCGGTAC CAGTGTGGTT AATTTCAACT CAAAAAGCAT CATTACAGAA
TTGGACGCCT TAAATATTTA TAATACCAAT TATTCAGGGG CGGTTATAAC CAATGTCGAT
ATCGATGGTG ATGTCATTTC AACGACTAGC CAGGCGACCT CTTTTTATAA CGATGCCTAC
AACGGCTCTG CAAACTTTAC GTTTCGTGCG AACAATGTCA CTGGTGAATA TTCCGGCATT
TCTATCAATA ATAGCAGTCA TAACAGTGCT AATAACAACC ATGATAATGC GGTGATAACC
GATATCCTGT TGACGGGGGA TCTTACGTCT ACTTCAGGAT CGGGCCTCCA GATAAACTCT
TATATGGACG ATGGGGATAT CAAGGTATCA GCCCAGTTGG AGAACATCTA TTCTTACTAT
GAAGCCCTCA GTGTGCGTGC GGATACCCTA ACTGGCAACC TGCAGTTTAA CATCGATGTT
TCGGGCAATA TTGTTGCTGA AAATGGCCTC GGTTTCATGG TGATGGGGGG CGCTTCCGAA
GGCAACTCCA CTATGATCAT CAATGCGAAT AACATTAGTT CTGGTAGTCA AGCACTCAAT
ATTTACAACT ATAGCGGTTT AGGTTCGGCA TTTACTGCCG TTACCGCAAC CGGGCATCTC
GTCTCTGAAC AGGGGATAGG GGCAATGTTC AGTACCTATG TCAGTCAAGG GGATGCTACC
GCTGTCATCA ATTTAAATGA CATCACTACT GCGGGCAGTG GTGTAAAGAT AGACACCATA
GCGAATGGGG GGAATTCAAC CACCTATCTC ACCGTGGTGG GCCAGATTAA CTCTAGTTTG
TATGATGGTA TTGATCTTCG TGCGACGGCT ACTGAAGGTA ATACCCTGGT CAGCATTGAC
GTCAATAATA TCGCCAGTGA ATACGATGCT ATCCACCTCG ATAACAAGAA CTACACCACA
GGCGCAGACA ACGGCACCTC GACCATTGAT CTGATCACCC GGGGCGCGCT GGTTTCGCAG
CAGGGCTACG GAATTAATAT TGAAACCAAT ACCGCAGACA CCTATGTCAC CGTGGGCGGC
TTGGTGCACG GCGGCAATGG CACCGCAATC GGCATTCATC GGCTTGATAA CATTCAAACA
TCGGCCACGT TAGAGCTGCA ATCTGGCTAT GCCCTTGAAG GCGTTACGCA GGCACTGGTC
TTCAATGGCA GTTATGCGGA GATCAATGAT GCCGCGCTGG ATCTGGCAAA CAGCCATCTG
GTGCTGGGCG GAGCAGGAGA CGCCGCTTTC GATCTCACGC GTATTGATAA CCGTGAAGAG
GCCATTCTGG ATGGCGACCC GAACCGGATC ACCGGCTTCG GTACCCTGAC CAAAACCAAC
AACAGCATCT GGACGTTAAC CGGCGCCAAT ATGGCCGACG GTGACGCCAA TGCCTTCCTG
TCGGCCAATA TCGCCGGGGG GATTTTGGTG CTGGATAACG CCACGCTGGG CCTGACACCT
GACGCTGGGG CACTCACTGG AGCCACAGTA AACCGCCTCA GTGCTGCCGA TATCGCCGCT
GACCCGACGC TAGTGGCTAC CGAAACCGGT GCATTAACCC TGGCTGAAGG CGGGGCGTTG
TCCTCGCTCG GTGACTCGGT TCTGAGCGGT AACCTTATCA GCGCCGGTGG GATCCTGCTG
TCAAACCACT ATACCGGCGG CAATGGTGCC GCTACCGACG ATCGGCTGAC CGTGACCGGG
ACTTATTTTG GTGAAAATAA CGGTTCCGGT GAAGGGGCCT GGCTGGCACT CGATACGGTG
CTGGGGGATG ACGATTCTGC CACCGACCGG TTAGTGATCA ACGGCGATGC CACCGGCACC
ACCTCGGTCC GGGTGAACAA TGCGGGCGGT CTGGGCGATA AAACCCTCAA TGGCATCAAC
CTGATCACCG TGGACGGTCT GGCGCAGGAT GACACCTTCC TACTGGCCGG GGACTATGTC
ACCACGGATG GCTATCAGGC GGTGGTGGGC GGGGCGTATG CCTACACCTT ACAGGCCGAC
GGGGAAGCCG CCACTGCGGG GCGCAACTGG TATCTCTCTT CAGAACTGAT GTTAACCGAG
GGGGTACGCT ATCAGGCGGG CGTGCCGCTG TATGAACAAT ATCCGCAGGT GCTGGCCGCC
CTGAATACCC TGCCGACGCT GCAACAGCGT GTCGGTAACC GTTACGGGGC GCCGGGCGCG
CTGGCAGACC TGGACTTTGA CAATAATCAA TGGGCCTGGG GCCGTATTGA AGGGAGCCAC
CAGGTCACCG ACCCGGCCCG CTCCACCAGT GGTTCACAAC GCGAGATTGA TGTGTGGAAG
TTGCAGACCG GCATTGATGT GCCGCTGTAT CAGAGCCAGG ACGGTTCACT GCTGACCGGC
GGGGTAAACT TCTCCTACGG TAAAGCCAAA GCGGATATCC ACTCATTCTT TGGTGATGGC
CGCATCAACA GCGCAGGTTA CGGTCTTGGC ACCAGCCTGA CCTGGTATGG CAATAACGGC
GTGTATGTGG ATGGCCAGTT GCAGACGATG TGGTTTGACA GCGACCTGAG CTCCCGTACC
GCAGGGCATG CAGTGGCCAG CGGTAACAAT GGTCGCGGGT ATACCTCGGC GATAGAAGCC
GGTAAAGGTT ACGCACTGGG TAACGGGTTG TCACTGACCC CGCAGATGCA GGTGACCTAC
TCGCGGGTCG ATTTCGATAC CTTCCGCGAT CCGTTTGATA GCGAAGTTTC GCTGCAAGAG
GGTGACAGCC TGCGGGGCCG CCTCGGTGTC TCACTGGATA AGGAAACGAC CTGGAGCGCG
AAAGACGGCA CCACCCGCCG CTCACACATT TACAGTCATC TCGATCTGCA CAATGAGTTC
CTCAATGGCA GTAAAGTGCA GGTCTCGGGG GTGGAGTTCG CCACCCGGGA TGAGCGTCAG
TCGGTGGGGT TAGGCGCGGG CGGCACCTAT GAATGGCAGA ATGGTCGCTA CGCGGTTTAC
GGCAATGTCA ATCTGCTGGG GGCTACACGG AATGTCAGTG ACAACTATGC CGTCGGCGGT
ACGATAGGTG CACGGGTGAG CTGGTAA
|
|---|
| Protein sequence | MLKHFRLGLF TANVQADTGS QHSFSRVPAA AINPITLAIV VAFSTIALPP MALAACTSPG
VGTYVCEGEN TDGIILSGTD IAVETQPGFS IIVPENGDPA LSLVGSGTIS YLDTNSSALD
TTGADSLYIQ NDTHTTGQSS SINVQTNGSM GSGINISNHS GADSTVQVDV SGTLFGDLNG
SPALLIYSSA ENNSTILMNI NTIFGDVGIR SDNTSFNGTA ITNVDIANDI NATYSGATIN
NSGSGGTSVV NFNSKSIITE LDALNIYNTN YSGAVITNVD IDGDVISTTS QATSFYNDAY
NGSANFTFRA NNVTGEYSGI SINNSSHNSA NNNHDNAVIT DILLTGDLTS TSGSGLQINS
YMDDGDIKVS AQLENIYSYY EALSVRADTL TGNLQFNIDV SGNIVAENGL GFMVMGGASE
GNSTMIINAN NISSGSQALN IYNYSGLGSA FTAVTATGHL VSEQGIGAMF STYVSQGDAT
AVINLNDITT AGSGVKIDTI ANGGNSTTYL TVVGQINSSL YDGIDLRATA TEGNTLVSID
VNNIASEYDA IHLDNKNYTT GADNGTSTID LITRGALVSQ QGYGINIETN TADTYVTVGG
LVHGGNGTAI GIHRLDNIQT SATLELQSGY ALEGVTQALV FNGSYAEIND AALDLANSHL
VLGGAGDAAF DLTRIDNREE AILDGDPNRI TGFGTLTKTN NSIWTLTGAN MADGDANAFL
SANIAGGILV LDNATLGLTP DAGALTGATV NRLSAADIAA DPTLVATETG ALTLAEGGAL
SSLGDSVLSG NLISAGGILL SNHYTGGNGA ATDDRLTVTG TYFGENNGSG EGAWLALDTV
LGDDDSATDR LVINGDATGT TSVRVNNAGG LGDKTLNGIN LITVDGLAQD DTFLLAGDYV
TTDGYQAVVG GAYAYTLQAD GEAATAGRNW YLSSELMLTE GVRYQAGVPL YEQYPQVLAA
LNTLPTLQQR VGNRYGAPGA LADLDFDNNQ WAWGRIEGSH QVTDPARSTS GSQREIDVWK
LQTGIDVPLY QSQDGSLLTG GVNFSYGKAK ADIHSFFGDG RINSAGYGLG TSLTWYGNNG
VYVDGQLQTM WFDSDLSSRT AGHAVASGNN GRGYTSAIEA GKGYALGNGL SLTPQMQVTY
SRVDFDTFRD PFDSEVSLQE GDSLRGRLGV SLDKETTWSA KDGTTRRSHI YSHLDLHNEF
LNGSKVQVSG VEFATRDERQ SVGLGAGGTY EWQNGRYAVY GNVNLLGATR NVSDNYAVGG
TIGARVSW
|
|---|
| |