Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpAngola_A3222 |
Symbol | csdA |
ID | 5801698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pestis Angola |
Kingdom | Bacteria |
Replicon accession | NC_010159 |
Strand | + |
Start bp | 3411648 |
End bp | 3412853 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641341050 |
Product | cysteine sulfinate desulfinase |
Protein accession | YP_001607575 |
Protein GI | 162420213 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0520] Selenocysteine lyase |
TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily [TIGR03392] cysteine desulfurase, catalytic subunit CsdA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000462422 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.220152 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAGTTT TTAATCCAAT GGATTTTCGT CGGGAATTCC CTGCGCTCAG TGATAAATTA ACCTATCTGG ACAGTGCGGC GACCGCCTTG AAACCACGTG CAATGATTGA CGCGACACAG CAATTTTATC AGCAGGATTC AGCAACGGTA CACCGCAGCC AACATCAATC GGCGCTGTCA TTAACGGTTC GCTTTGAAAA CACCCGCCAA CAAGTGGCTG ATTTTATTAA CTCATCTACA GCAGAAAATA TTATCTGGAC GCGAGGAACA ACTGAAGCCA TCAATCTGAT CGCGCAAAGT TATGCCCGCC CCCGTTTACA ACCTGAAGAT GAAATTATTG TCAGCGAAGC TGAACATCAT GCGAATTTAA TTCCCTGGTT GATGGTAGCG GAGCAGACCG GTGCAAAAAT AGTCAAATTA CCTCTTGGCC TTGATCATCT GCCAGATTTA CAGCAACTCC CTCAACTACT TAATGAAAAA ACACGCATAT TAGCGCTGGG GCAGATGTCT AACGTAACAG GCGGTAGCCC TGATCTGGCT CAGGCTATTA GGCTGGCTCA CCAATATGAC TGTGTTGTCG TGGTTGACGG TGCTCAGGGA ATTGTTCATT ACCCAGCCGA TGTTCAGGCA TTGGATATTG ATTTTTATGC ATTCTCTTCC CATAAATTGT ATGGCCCAAC CGGCATTGGC GTGCTGTATG GGAAGACTGA ATTATTAGAA GAGATGCCCG CCTGGCAAGG CGGCGGTAAA ATGCTTACCC ATGCATCATT CGGGGGCTTT ACACCTCATG AAGTGCCTTA TCGCTTTGAA GCGGGTACAC CCAATATTGC TGGCGTTATT GGTTTATCAG CGGTACTCAA ATGGCTGGAA CATATTGATC TGGAAGAGGC CGAAGTTTAT AGCCAAGGTT TAGCTACAAT GGCAGAAAAT AAGCTCGCAC AATTACCGGG TTTTCACAGT TACCGTTGTC AGCAATCCAG TTTATTAGCA TTTACTTTCG ATGGTGTTCA TCACAGTGAT TTAGTGGCGT TATTGGCCGA GCAAGGTATC GCACTACGTG CTGGGCAGCA CTGCGCACAG CCACTGATGG CGGCTCTGGG AGTCAATGGC AGTCTGCGGG CTTCTTTTGC GCCTTATAAT ACCCCCCAAG ATGTTGAAAT GCTTTGCTCT GCGCTTGGTA AGGCATTGGA ACTGCTTCGA GACTAA
|
Protein sequence | MKVFNPMDFR REFPALSDKL TYLDSAATAL KPRAMIDATQ QFYQQDSATV HRSQHQSALS LTVRFENTRQ QVADFINSST AENIIWTRGT TEAINLIAQS YARPRLQPED EIIVSEAEHH ANLIPWLMVA EQTGAKIVKL PLGLDHLPDL QQLPQLLNEK TRILALGQMS NVTGGSPDLA QAIRLAHQYD CVVVVDGAQG IVHYPADVQA LDIDFYAFSS HKLYGPTGIG VLYGKTELLE EMPAWQGGGK MLTHASFGGF TPHEVPYRFE AGTPNIAGVI GLSAVLKWLE HIDLEEAEVY SQGLATMAEN KLAQLPGFHS YRCQQSSLLA FTFDGVHHSD LVALLAEQGI ALRAGQHCAQ PLMAALGVNG SLRASFAPYN TPQDVEMLCS ALGKALELLR D
|
| |