| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A3141 |
|---|
| Symbol | dapE |
|---|
| ID | 5801615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 3328057 |
|---|
| End bp | 3329184 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641340975 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_001607503 |
|---|
| Protein GI | 162421933 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTGTC CGGTAATCGA ATTGGCCCAA CAGTTAATTA AACGCCCATC GCTCAGCCCT
TCAGATGCGG GTTGCCAAGA GATCATGATC CAGCGCCTAG CCGCCATCGG CTTTACCATC
GAACCCATGA ATTTTGGTGA TACGCTTAAT TTTTGGGCAT GGCGTGGCGA AGGCGAAACG
CTGGCATTTG CTGGTCACAC GGATGTGGTG CCTACCGGTG ACGAGAGCCA CTGGCACAGC
CCACCGTTTG AACCCACCAT CCGTGACGGC ATGTTGTATG GCCGAGGTGC CGCAGACATG
AAAGGCTCAC TGGCAGCAAT GATCGTAGCA GCCGAGCGTT TTGTCGCCGC GCACCCTGAC
CACAAAGGCC GCCTGGCCTT TATGATAACC TCCGATGAAG AAGCCAAAGC CACCAACGGT
ACAGTAAAAG TGGTTGAAGC CCTGATGGCA CGCCACGAGC GGCTGGATTA TTGTCTGGTG
GGCGAACCAT CCAGTACTGA CCGGGTTGGC GATATCGTGA AAAATGGCCG CCGTGGCTCC
ATCACCGCTA ACTTGCGTAT TCATGGAGTG CAAGGGCACG TGGCGTATCC TCATCTGGCG
GATAATCCCG TTCATCGTGC TATGCCAGCG CTGAATGAAT TGGTTGCCAC CCAATGGGAT
GAAGGCAATG CGTTTTTCCC TGCCACCAGT ATGCAAATTG CCAATTTACA GGCCGGTACG
GGCAGCAATA ATGTTATTCC CGGTGAATTT TATGTGCAGT TTAACTTCCG TTTCAGTACT
GAACTGACTG ACAGCCTGAT CAAGCAACGG GTAGCCGCAT TGCTGGATCG ACATCAGCTT
GATTACACCC TGGAATGGGT ATTGTCTGGT CAACCTTTCC TGACCGCCAA AGGGGCGTTG
GTGGATGCCG TGGTTAATGC CGTTAAGCAT TACACTGAAA TCACACCGCA ACTGTTAACC
ACCGGGGGGA CGTCAGATGG CCGCTTTATT GCGTTAATGG GGGCGCAAGT GGTTGAGTTG
GGGCCAGTTA ATGCCACCAT TCATAAAGTT AATGAATGTG TTAGCGCGGC TGATTTACAA
TTGCTCAGCC GTATGTACCA GAAAATCATG GAACAACTGA TCGCATGA
|
|---|
| Protein sequence | MICPVIELAQ QLIKRPSLSP SDAGCQEIMI QRLAAIGFTI EPMNFGDTLN FWAWRGEGET
LAFAGHTDVV PTGDESHWHS PPFEPTIRDG MLYGRGAADM KGSLAAMIVA AERFVAAHPD
HKGRLAFMIT SDEEAKATNG TVKVVEALMA RHERLDYCLV GEPSSTDRVG DIVKNGRRGS
ITANLRIHGV QGHVAYPHLA DNPVHRAMPA LNELVATQWD EGNAFFPATS MQIANLQAGT
GSNNVIPGEF YVQFNFRFST ELTDSLIKQR VAALLDRHQL DYTLEWVLSG QPFLTAKGAL
VDAVVNAVKH YTEITPQLLT TGGTSDGRFI ALMGAQVVEL GPVNATIHKV NECVSAADLQ
LLSRMYQKIM EQLIA
|
|---|
| |