Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpAngola_A2811 |
Symbol | rpoC |
ID | 5801283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pestis Angola |
Kingdom | Bacteria |
Replicon accession | NC_010159 |
Strand | + |
Start bp | 2942514 |
End bp | 2946734 |
Gene Length | 4221 bp |
Protein Length | 1406 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641340667 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_001607197 |
Protein GI | 162418926 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAAGCG CAAACTAAGA CCGAAGAGTT TGATGCGATC AAAATTGCTC TGGCATCGCC AGACATGATC CGTTCATGGT CATTCGGTGA AGTTAAAAAG CCGGAAACCA TTAACTACCG TACGTTCAAA CCAGAACGTG ACGGCCTTTT CTGCGCCCGT ATCTTTGGCC CAGTAAAAGA TTACGAATGC CTGTGCGGTA AGTACAAGCG TTTAAAACAC CGTGGTGTTA TTTGTGAGAA ATGCGGCGTT GAAGTGACTC AAACTAAAGT GCGCCGTGAG CGTATGGGTC ACATCGAACT GGCTTCTCCA ACTGCGCACA TCTGGTTCCT GAAATCGCTG CCATCTCGTA TCGGTTTGCT GCTGGATATG CCATTACGTG ACATCGAACG TGTACTGTAC TTCGAATCCT ATGTGGTTAT TGAAGGCGGT ATGACCAACC TGGAACGTCG CCAGATTCTG ACTGAAGAGC AGTATCTGGA TGCGTTGGAA GAGTTTGGTG ATGAGTTCGA CGCGAAAATG GGCGCCGAGG CTATTCAGGC CCTGTTGAAA AACATGGATC TGGAAGCTGA GTGCGAGATC CTGCGTGAAG AATTGAACGA AACAAATTCT GAAACCAAGC GTAAGAAACT GACCAAGCGT ATCAAGTTGC TGGAAGCGTT CGTACAGTCT GGCAACAAGC CAGAGTGGAT GATCCTGACC GTGCTGCCTG TGTTGCCGCC AGATCTGCGT CCATTGGTTC CGTTGGATGG TGGTCGCTTT GCGACTTCCG ATCTGAACGA TTTGTATCGT CGCGTGATCA ACCGTAACAA CCGTCTGAAA CGCCTGCTGG ACTTGGCGGC ACCGGACATC ATCGTACGTA ACGAAAAGCG TATGCTGCAA GAAGCAGTAG ATGCATTGCT GGATAACGGC CGTCGCGGTC GTGCGATTAC CGGCTCTAAC AAGCGTCCGT TGAAGTCACT GGCTGACATG ATCAAAGGTA AGCAAGGTCG TTTCCGTCAG AACTTGCTGG GTAAACGTGT TGACTACTCA GGTCGTTCGG TTATCACCGT TGGTCCATAC CTGCGTCTGC ATCAGTGCGG TCTGCCTAAG AAAATGGCTC TTGAGCTGTT TAAACCGTTC ATCTACGGCA AGCTGGAATT GCGTGGTCTT GCTACCACCA TCAAAGCCGC CAAGAAGATG GTTGAGCGTG AAGAAGCGGT TGTTTGGGAT ATCCTGGATG AAGTTATCCG CGAACACCCA GTGCTGCTGA ACCGTGCACC AACCCTTCAC CGTTTGGGTA TCCAGGCGTT TGAACCGGTT CTGATCGAAG GTAAGGCAAT CCAGTTGCAC CCATTGGTTT GTGCGGCATA TAACGCCGAC TTCGATGGTG ACCAAATGGC TGTCCACGTA CCGCTGACAC TGGAAGCTCA GTTAGAAGCG CGTGCGTTAA TGATGTCTAC CAACAACATC CTGTCACCCG CGAACGGCGA GCCAATCATC GTTCCTTCTC AGGACGTTGT ATTGGGTCTG TACTACATGA CCCGCGACTG TGTTAACGCC AAAGGCGAAG GCATGGTTCT GACTGGCCCG AAAGAAGCTG AGCGTATTTA TCGCGCTGGC TTGGCATCTC TGCATGCCCG CGTAAAAGTA CGTATTACCG AAGAAATTCG TAATACCGAA GGCGAAAGCA TTACGCGTAC CAGCATTATC GATACGACTG TAGGCCGTGC TATTTTGTGG ATGATCGTCC CGCAAGGCCT GCCTTACTCT ATCGTTAACC AGCCGCTGGG TAAAAAAGCT ATCTCTAAGA TGCTGAACAC GTGTTACCGC ATCTTGGGCT TGAAGCCAAC GGTTATCTTT GCTGACCAGA TCATGTACAC CGGTTTTGCT TACGCAGCAC GCTCAGGCGC CTCTGTAGGT ATCGATGACA TGGTTATCCC AGAAGCGAAA GCGGGGATCA TCGAAGAAGC TGAAACTGAA GTTGCTGAGA TCCAAGAACA GTTCCAATCT GGTCTGGTCA CGGCAGGCGA ACGTTATAAC AAAGTGATCG ATATCTGGGC TGCGGCTAAC GAACGTGTTG CTAAAGCGAT GATGGATAAC TTGTCGGTTG AGGATGTTGT CAACCGTGAT GGCGTTGTTG AACAGCAAGT TTCATTCAAC AGCATCTTCA TGATGGCCGA CTCCGGTGCG CGTGGTTCTG CCGCACAGAT TCGTCAGCTG GCAGGTATGC GTGGTCTGAT GGCTAAGCCA GACGGCTCGA TCATTGAAAC GCCAATCACC GCGAACTTCC GTGAAGGTTT GAACGTACTT CAGTACTTCA TCTCAACCCA CGGTGCGCGT AAAGGTTTGG CGGATACCGC ATTGAAAACT GCGAACTCCG GTTACCTGAC CCGTCGTTTA GTTGACGTGG CACAGGATCT GGTGGTGACT GAGGATGATT GTGGTACCCA TAACGGTATC GTGATGACCC CGGTTATCGA AGGTGGTGAT GTTAAAGAGC CACTGCGTGA TCGCGTACTG GGTCGTGTGA CTGCAGAAGA AGTTATCAAG CCAGGTTCGG CTGATATTCT GGTTCCGCGT AACACCCTGC TGGACGAAAA ATGGTGTGAT CTGTTAGAAG AAAACTCCGT CGACAGCGTT AAAGTTCGCT CCGTAGTAAG CTGTGAAACT GATTTCGGTG TGTGTGCTAA CTGCTATGGT CGCGACCTGG CACGTGGCCA CATCATCAAC AAAGGTGAAG CGGTTGGTGT TATTGCAGCA CAGTCCATCG GTGAGCCGGG TACTCAGCTT ACGATGCGTA CGTTCCACAT CGGTGGTGCG GCATCTCGTG CGGCAGCAGA ATCCAGCATC CAGGTTAAGA ACAAAGGCAG CTTGAAACTG AGCAACGTCA AGTTCGTGAC CAATGCGGCT GGCAAGCTGG TTATTACGTC TCGTAATACC GAGCTGAAGC TGATCGACGA ATTCGGTCGT ACCAAAGAAA GCTATAAAGT GCCTTACGGT GCGGTAATGG CTAAAGGCGA TGGCGCAGAA GTTCAGGGCG GCGAAACCGT TGCTAACTGG GATCCGCACA TCATGCCAGT GGTCACCGAA GTGAGCGGCT TCATTCGCTT CGCCGACATG GTTGATGGCC AGACCATTAC TCGCCAGACC GACGAACTGA CTGGTTTGTC TTCTCTGGTC GTTCTGGACA GTGCAGAGCG TACGGGTAGC GGTAAAGACC TGCGTCCAGC ACTGAAAATC GTTGATGCCA AAGGCAATGA CGTATTGATC CCAGGTACTG ATATGCCTGC TCAATACTTC CTGCCAGGTA AAGCGATTGT ACAGCTGGAA GACGGTATTC AGATCGGTGC GGGTGATACC TTGGCGCGTA TTCCTCAGGA ATCAAGCGGT ACCAAGGATA TTACCGGTGG TCTGCCACGT GTTGCTGACT TGTTCGAAGC ACGTCGTCCG AAAGAGCCTG CAATCCTGGC TGAAATCAGC GGGATCATCT CGTTCGGTAA AGAGACCAAA GGCAAGCGTC GTCTGGTGAT CTCACCGTTG GATGGTAGCG ATGCATACGA AGAGATGATT CCGAAATGGC GTCAGCTTAA CGTGTTCGAA GGTGAAGTTG TGGAACGCGG TGACGTGGTT TCCGATGGCC CAGAATCTCC ACATGACATT CTGCGTCTGC GTGGCGTTCA CGCGGTTACC CGCTACATCA CCAACGAAGT GCAGGAAGTT TACCGTCTGC AAGGCGTTAA GATTAACGAT AAACACATTG AAGTTATCGT TCGTCAGATG CTGCGTAAAG GCACTATCGT TGATGCAGGT AGCACCGACT TCCTGGAAGG CGAGCAGGCA GAAATGTCCC GCGTTAAAAT CGCTAACCGT AAGCTGGCAG CAGAAGGCAA AATTGAGGCT ACGTTCACTC GTGACCTGCT GGGTATCACC AAGGCATCCT TGGCGACCGA GTCCTTCATC TCTGCGGCTT CGTTCCAGGA AACCACGCGC GTTCTTACTG AAGCGGCAGT TGCCGGTAAA CGTGATGAAT TGCGTGGCCT GAAAGAAAAC GTAATCGTGG GCCGTCTGAT CCCAGCCGGT ACCGGTTATG CTTATCATCA GGACCGTATG CGCCGTAAAG CACAGGGTGA AGCGCCTGTT GTTCCACAAG TCAGCGCGGA TGAAGCGACT GCAAACTTGG CCGAATTGCT TAATGCCGGT TTTGGTAACA ACAAAGGCTA A
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Protein sequence | MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERRQIL TEEQYLDALE EFGDEFDAKM GAEAIQALLK NMDLEAECEI LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERIYRAG LASLHARVKV RITEEIRNTE GESITRTSII DTTVGRAILW MIVPQGLPYS IVNQPLGKKA ISKMLNTCYR ILGLKPTVIF ADQIMYTGFA YAARSGASVG IDDMVIPEAK AGIIEEAETE VAEIQEQFQS GLVTAGERYN KVIDIWAAAN ERVAKAMMDN LSVEDVVNRD GVVEQQVSFN SIFMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHNGI VMTPVIEGGD VKEPLRDRVL GRVTAEEVIK PGSADILVPR NTLLDEKWCD LLEENSVDSV KVRSVVSCET DFGVCANCYG RDLARGHIIN KGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSLKL SNVKFVTNAA GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVMAKGDGAE VQGGETVANW DPHIMPVVTE VSGFIRFADM VDGQTITRQT DELTGLSSLV VLDSAERTGS GKDLRPALKI VDAKGNDVLI PGTDMPAQYF LPGKAIVQLE DGIQIGAGDT LARIPQESSG TKDITGGLPR VADLFEARRP KEPAILAEIS GIISFGKETK GKRRLVISPL DGSDAYEEMI PKWRQLNVFE GEVVERGDVV SDGPESPHDI LRLRGVHAVT RYITNEVQEV YRLQGVKIND KHIEVIVRQM LRKGTIVDAG STDFLEGEQA EMSRVKIANR KLAAEGKIEA TFTRDLLGIT KASLATESFI SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRKAQGEAPV VPQVSADEAT ANLAELLNAG FGNNKG
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