Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpAngola_A2744 |
Symbol | ligA |
ID | 5801216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pestis Angola |
Kingdom | Bacteria |
Replicon accession | NC_010159 |
Strand | - |
Start bp | 2867967 |
End bp | 2869979 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641340604 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_001607138 |
Protein GI | 162420672 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000148607 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATCGA TAATCCAACA AATTAATCAA CTAAGAACTT CATTGCGCCA TCATGAACAT CAATACCATG TGCTGGATGC CCCCGAAATC CCTGATGCTG AATACGACCG TATGATGCAA CAACTGCGTG ATTTAGAAGC ACAACATCCT GAACTGGTGA CTAATGACTC ACCGACGCAA CGGGTTGGTG CCGCGCCTCT TGATGCCTTT GAACAGGTGA AGCACGAAGT ACCGATGCTG TCTCTTGATA ATGTGTTTGA TGAAGAAAGT TATCTGGCCT TCGATAAACG GGTACATGAC CGGCTTAAAA CGGCAGAACC ACTGACATTT TGTTGTGAAC TGAAGCTAGA TGGTCTGGCG GTCAGTTTAT TGTATGAAAA TGGTGAATTG GTGAGAGCCG CGACACGTGG TGATGGCACT ACGGGAGAAA ATATTACCGC TAATGTGCGT ACTATTCGTG CCATTCCACT GCGCCTACAT GGGGATAATG TCCCGCGGCG CGTAGAAGTC CGTGGCGAGG TTTTTATGCC ACAAGCCGGT TTTGAACAGC TTAACGAAGA GGCTCGTCGC AAAGGAGGGA AGGTCTTTGC CAACCCACGG AATGCGGCGG CGGGATCGTT ACGCCAACTT GATCCCCGTA TTACAGCCAA ACGGCCACTC ACCTTCTTCT GCTATGGTGT CGGTCTGCTG GATGGCGGCG AGCTACCCCG TAGCCATATT CAGTGTCTGA TGCAATTTAA GGCATGGGGG TTACCCGTGA GTGAGCGGGT GAAACTCTGC ACTGGCAGTG ATCAGGTTAT TGCTTTTTAT CGTCAAATAG AGCAAGACCG CGCAGGCTTG GGCTTTGATA TTGATGGTGT GGTGATCAAA GTTGATGATC TTGCTTTGCA GGAGCAATTG GGGTTTGTTG CGCGTGCCCC TCGCTGGGCG ACGGCATTTA AATTCCCGGC GCAGGAACAG ATCACACAGG TCCGTGAAGT GGAATTTCAA GTGGGTCGTA CCGGTGCCAT TACTCCCGTA GCCCGTCTGG AGCCGGTTCA GGTGGCTGGC GTGATTGTCA GTAATGCGAC ATTGCACAAT GCCGATGAAA TCGAACGCCT TGGTTTGCGT ATTGGCGATA CGGTCATTGT GCGCCGTGCG GGTGATGTGA TCCCACAAGT TGTTGGTGTG GTCATGGAAC AACGCCCTGA TGATACGAAG GAGATCACTT TCCCAAGCCA ATGCCCAGTG TGTGGCTCCG ATATTGAACG GGTGGAAGGG GAGGCTGTTG CCCGCTGCAC TGGCGGCTTG TTCTGTGCTG CACAGCGTAA AGAGGCACTT AAACATTTTG TCTCCCGGCG AGCACTGGAT GTAGACGGTA TGGGCGATAA AATTATCGAA CAACTGGTCG AGAAACAGTA TGTTGAAAAT CCAGCTGATT TATTCCAACT GACCGCAGGT AAGTTGACGG GGTTAGATCG GATGGGGCCA AAGTCTGCGC AAAATCTGAT TGCGGCGCTG GAGAAGGCCA AACAGACCAC CTTTGCACGC TTCTTGTATG CCTTGGGGAT CCGCGAAGTG GGCGAAGCGA CGGCCGCAAA TTTAGCCGCT CACTTCCGCA CTCTGGATAA TCTGCGTGCA GCAGATATTG AGACGTTAAA AAGTGTGCCG GATGTCGGCG AGGTGGTGGC TAAACATGTG ATGAACTTCC TCAGTGAGGA ACATAATCAG AAAGTCATCG AAGAACTGGA GAAAGTGGTC AGTTGGCCTG AGCCGCAGCA AATTGTAGTC GAGGAGAGCG ATAGCCCCTT CGCTGGAAAA ACGGTGGTCC TGACGGGGTC ATTGACGATC CTTTCACGGG ATGAAGCGAA AGACCGCCTG ACAGCATTAG GCGCAAAAGT GAGTGGCAGT GTCTCTAAAA AAACGCATCT GGTGATCGCT GGCGAGGCGG CTGGTTCTAA ACTGGCGAAA GCGCAGGAAC TCGGAATTAA AGTTATTGAT GAAGCTGAAA TGATCCGTTT GCTGGGTGAA TAA
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Protein sequence | MESIIQQINQ LRTSLRHHEH QYHVLDAPEI PDAEYDRMMQ QLRDLEAQHP ELVTNDSPTQ RVGAAPLDAF EQVKHEVPML SLDNVFDEES YLAFDKRVHD RLKTAEPLTF CCELKLDGLA VSLLYENGEL VRAATRGDGT TGENITANVR TIRAIPLRLH GDNVPRRVEV RGEVFMPQAG FEQLNEEARR KGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGLL DGGELPRSHI QCLMQFKAWG LPVSERVKLC TGSDQVIAFY RQIEQDRAGL GFDIDGVVIK VDDLALQEQL GFVARAPRWA TAFKFPAQEQ ITQVREVEFQ VGRTGAITPV ARLEPVQVAG VIVSNATLHN ADEIERLGLR IGDTVIVRRA GDVIPQVVGV VMEQRPDDTK EITFPSQCPV CGSDIERVEG EAVARCTGGL FCAAQRKEAL KHFVSRRALD VDGMGDKIIE QLVEKQYVEN PADLFQLTAG KLTGLDRMGP KSAQNLIAAL EKAKQTTFAR FLYALGIREV GEATAANLAA HFRTLDNLRA ADIETLKSVP DVGEVVAKHV MNFLSEEHNQ KVIEELEKVV SWPEPQQIVV EESDSPFAGK TVVLTGSLTI LSRDEAKDRL TALGAKVSGS VSKKTHLVIA GEAAGSKLAK AQELGIKVID EAEMIRLLGE
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