Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpAngola_A2304 |
Symbol | topA |
ID | 5800774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pestis Angola |
Kingdom | Bacteria |
Replicon accession | NC_010159 |
Strand | - |
Start bp | 2418181 |
End bp | 2420796 |
Gene Length | 2616 bp |
Protein Length | 871 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641340194 |
Product | DNA topoisomerase I |
Protein accession | YP_001606739 |
Protein GI | 162419163 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.926517 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGTAAAG CTCTCGTAAT AGTTGAGTCC CCGGCAAAAG CCAAAACTAT TAATAAATAC TTAGGGAATG ATTACGTGGT TAAGTCCAGC GTCGGTCACA TTCGTGATTT GCCGACCAGT GGCTCAGCCA GTAAAAAGAG CGCTAACTCA GCTGAAGAAA AAGCCAAAAA AGACGATAAA CCCAAAAAGA AAGTGAAGAA AGACGAAAAG GTTGCCTTAG TCAACCGTAT GGGGGTCGAT CCTTATCATG GCTGGAAAGC GCAGTATGAA ATTTTGTCTG GCAAAGAGAA AGTGGTTGCC GAGCTGAAAG CATTAGCAGA AAACGCGGAT CATATCTATC TCGCAACCGA CCTTGATCGC GAAGGTGAGG CTATTGCCTG GCATTTGCGG GAAGTGATCG GTGGGGACGA TAAACGTTTT AGCCGCGTTG TCTTTAACGA AATCACCAAG AATGCGATTC AGCAGGCGTT TAATCAGCCT GGTGAACTGA ACATCAGCCG TGTAAATGCA CAACAAGCCC GGCGTTTTAT GGATCGGGTT GTTGGCTATA TGGTCTCTCC ACTGTTGTGG AAGAAAATTG CCCGTGGCCT GTCAGCTGGC CGTGTACAGT CAGTTGCTGT GCGCCTTGTG GTTGAACGTG AAAAAGAGAT TAAAGCATTC GTTCCTGAAG AATATTGGGA GCTACATGCA GATTTAGTGG CTAAAGGTGA CATTCCGATT CAAATGGAAG TCACTCATGC CCATGGCAAG CCATTTAAAC CGGTAAATCG TGAGCAAACA CATGCAGCGC TGACGTTACT GGAAAATGCC CGTTATAAGG TGTTGGATCG TGAAGATAAA CCGACCAGCA GTAAGCCCAG CGCACCCTTC ATTACCTCCA CCTTACAGCA GGCGGCAAGT ACCCGTCTGA GTTTTGGTGT GAAAAAAACC ATGATGATGG CACAGCGCCT GTATGAAGCG GGTCATATCA CCTACATGCG TACCGACTCG ACTAATTTGA GTCAGGATGC ATTGACGATG GTACGTGGTT ATATCGGCGA TAATTTTGGT GATAAGTATC TGCCTGCAAC GCCTAACCAA TACAGCAGCA AAGAGAATTC GCAGGAAGCG CATGAGGCCA TCCGCCCTTC AGATGTCAAT GTGTTAGCTG AGCAGTTGAA AGATATGGAA GCGGATGCCC AGAGGTTGTA CCAATTGATT TGGCGTCAGT TTGTGGCGTG CCAGATGCCT CCGGCCAAGT ATGACTCGAC CACACTGACA GTGCAGGCGG GGGATTTCCA ACTGCGCGCC AAAGGCCGCA CATTGCGCTT TGATGGTTGG ACCAAGGTTA TGCCTGCGCT GCGTAAAGGT GATGAAGATC GCACCTTGCC GGTGATTGAA GTGGGCAGTG ATTTAGACTT ACAAAAACTG ATTCCGAGCC AGCATTTTAC CAAGCCACCG GCTCGTTATA GTGAAGCATC ATTAGTGAAA GAGCTGGAAA AACGGGGTAT TGGCCGTCCA TCGACTTATG CCTCTATTAT TTCGACCATT CAAGATCGTG GCTATGTGCG GGTAGAAAAC CGTCGCTTCT ACGCAGAGAA AATGGGTGAA ATTGTGACAG ACCGCTTGGA AGAAAACTTC CGCGAGCTGA TGAATTACGA TTTCACGGCA CGAATGGAAA GCGGTTTGGA TCAAGTCGCC AATGATCAGG CCGAATGGAA AGCGGTGCTG GATGGCTTCT TTGCTGAATT CAGCGAGCAG CTTGAAAAGG CAGAAAAAGA TCCTGAAGAA GGAGGAATGC GCCCGAATCA GATGGTGATG ACCAGCATTG ATTGCCCAAC CTGTGGCCGT CAGATGGGGA TCCGTACTGC GAGTACTGGG GTGTTCCTTG GCTGTTCCGG TTATGCATTG CCGCCTAAAG AGCGCTGTAA AACCACCATT AACTTGGTGC CGGACGCTGA GATTTTGAAT ATTCTGGAGG GTGATGATGC GGAGACTAAC GCATTACGTG CCCGCCGCCG TTGCCAGAAA TGTGGTACTG CGATGGATAG CTACCTTATC GATAATCAAC GCAAGTTACA TGTTTGCGGG AATAACCCAG CGTGTGATGG CTATGAAATC GAAGCAGGTG AGTTCCGGAT AAAAGGCTAT GAAGGCCCAA TTGTTGAGTG CGAGAAATGT GGTTCTGAAA TGCACCTGAA AATGGGGCGC TTCGGTAAGT ACATGGGCTG CACCAATGAC GAGTGTAAGA ATACCCGCAA GATTCTGCGT AGCGGTGAAG TTGCACCACC GAAAGAAGAT CCGGTACCAT TGTTAGAGTT GCCTTGCGAG AAATCAGATG CTTATTTCGT CCTACGAGAT GGCGCAGCTG GCGTGTTCTT GGCAGCCAAT ACATTCCCTA AATCGCGTGA AACCCGTGCA CCGCTGGTAG AAGAATTGGT TCGCTTTAAA GACCGTTTGC CTGAGAAGTT GCGTTATCTG GCTGATGCCC CTGTGGTTGA TAAAGAGGGT AATAAAACCC TGGTCCGTTT CAGCCGTAAA ACGAAGCAAC AGTATGTTTC ATCAGAGAAA GATGGCAAAG CAACAGGCTG GTCTGCTTTC TATATTGATG GTAAATGGGT TGAGGCAAAG AAATAA
|
Protein sequence | MGKALVIVES PAKAKTINKY LGNDYVVKSS VGHIRDLPTS GSASKKSANS AEEKAKKDDK PKKKVKKDEK VALVNRMGVD PYHGWKAQYE ILSGKEKVVA ELKALAENAD HIYLATDLDR EGEAIAWHLR EVIGGDDKRF SRVVFNEITK NAIQQAFNQP GELNISRVNA QQARRFMDRV VGYMVSPLLW KKIARGLSAG RVQSVAVRLV VEREKEIKAF VPEEYWELHA DLVAKGDIPI QMEVTHAHGK PFKPVNREQT HAALTLLENA RYKVLDREDK PTSSKPSAPF ITSTLQQAAS TRLSFGVKKT MMMAQRLYEA GHITYMRTDS TNLSQDALTM VRGYIGDNFG DKYLPATPNQ YSSKENSQEA HEAIRPSDVN VLAEQLKDME ADAQRLYQLI WRQFVACQMP PAKYDSTTLT VQAGDFQLRA KGRTLRFDGW TKVMPALRKG DEDRTLPVIE VGSDLDLQKL IPSQHFTKPP ARYSEASLVK ELEKRGIGRP STYASIISTI QDRGYVRVEN RRFYAEKMGE IVTDRLEENF RELMNYDFTA RMESGLDQVA NDQAEWKAVL DGFFAEFSEQ LEKAEKDPEE GGMRPNQMVM TSIDCPTCGR QMGIRTASTG VFLGCSGYAL PPKERCKTTI NLVPDAEILN ILEGDDAETN ALRARRRCQK CGTAMDSYLI DNQRKLHVCG NNPACDGYEI EAGEFRIKGY EGPIVECEKC GSEMHLKMGR FGKYMGCTND ECKNTRKILR SGEVAPPKED PVPLLELPCE KSDAYFVLRD GAAGVFLAAN TFPKSRETRA PLVEELVRFK DRLPEKLRYL ADAPVVDKEG NKTLVRFSRK TKQQYVSSEK DGKATGWSAF YIDGKWVEAK K
|
| |