| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A1041 |
|---|
| Symbol | pilA |
|---|
| ID | 5799504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | + |
|---|
| Start bp | 1066363 |
|---|
| End bp | 1066827 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641339029 |
|---|
| Product | putative major pilin subunit |
|---|
| Protein accession | YP_001605601 |
|---|
| Protein GI | 162420744 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.131052 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAC ATCAGGGTTT AACATTACAG AAAGGTTTTA CATTAATTGA ATTGATGGTT
GCGGTTGCTA TCATTGCAGT CCTCAGTGGT ATTGGCATTC CCTCATATCA ACGTTATATC
CAAAAAGCAG CACTCACCGA CATGCTACAG GCCATCGTCC CCTACAAGAT GGCGGTAGAA
CTTTGTGCTC TTGAGCAATC CAACCTTGAT AGCTGCAACG CTGGCAGTAA TGGGATCCCC
GCAGGGCAAG TATCGCGTTA TATCAATGCA ATAAATATTG CCAAAGGTGT TATTACATTA
AGTGGCCAGC ATACGCTTAC TGGCCTGACA TTGGCGATAT CACCAACCCG AAACAGCAAC
GGAAATTTAG TCTGGGCCAG AACATGTACG GCAACAGATA GTGCCATGAC TGATAGTTGT
AAAGCGGTAT TCCGTTTCAA TGATAAGGCC CCATCAAATG GCTGA
|
|---|
| Protein sequence | MAKHQGLTLQ KGFTLIELMV AVAIIAVLSG IGIPSYQRYI QKAALTDMLQ AIVPYKMAVE
LCALEQSNLD SCNAGSNGIP AGQVSRYINA INIAKGVITL SGQHTLTGLT LAISPTRNSN
GNLVWARTCT ATDSAMTDSC KAVFRFNDKA PSNG
|
|---|
| |