| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A0794 |
|---|
| Symbol | nhaR |
|---|
| ID | 5799256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 809663 |
|---|
| End bp | 810562 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641338791 |
|---|
| Product | transcriptional activator NhaR |
|---|
| Protein accession | YP_001605369 |
|---|
| Protein GI | 162419450 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000000965689 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.230148 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATGT CACATATTAA TTTCAATCAT CTTTATTATT TTTGGCAGGT TTGTAAAGAA
GGCTCGGTTG TGGGAGCCGC AGAGGCACTG TTTCTGACTC CGCAAACAAT CACCGGCCAA
ATTAAAGCGC TGGAAGGGCG CTTAGGCGGT AAGCTATTTA AGCGGCGGGG GCGGGGATTG
GTCCCTTCAG AATTGGGGCA ACTGGTTTTC CGCTACGCGG ATAAAATGTT TATGCTTAGC
CAGGAAATGC TGGATATCGT TAACTACCGT AAAGAATCCC ACCTGTTATT CGATGTCGGC
GTCGCCGATG CATTATCGAA GCGTTTAGTG AGTCAGGTTC TGGAAACTGC GGTGGTTGAG
CATGAAAAAA TTCATCTACG CTGTTTTGAA TCCACCCATG AGATGTTGTT AGAACAACTC
AGTCAGCACA AATTGGATAT GATCTTGTCT GATTGCCCGG TTGACTCCAG TCAGCAAGAG
GGGTTGTTCT CAGTGAAACT GGGGGAATGC AGTGTCAGTT TCTATTGTCG CCAGCCTGTC
CCCGATCTAC CTTTCCCTGC CAGTTTGCAG CAAAAGCGTT TATTGATCCC CGGTCGCCGC
TCAATGTTAG GGCGAAAATT ACTCAACTGG ATTAACAGTA AAGGCCTGAA GGTAGAGGTT
TTGGGGGAAT TTGACGATGC TGCCCTGATG AATGCGTTTG CTGTCTATCA TGACGCTATC
TTTGTCGCAC CAACGATATA CGCCGCTGAT ACTTATGCTA ACGATAGTGA AATTATTGAA
ATTGGTCGTT TAGATAACGT ACAGGAAGAG TACTACGTTA TTTTTGCTGA GCGGATGATC
CAACATCCGG CAGTACAGCG GGTATGTAAC AAAGATTTTT CAGCGTTGTT TAACTGTTAA
|
|---|
| Protein sequence | MRMSHINFNH LYYFWQVCKE GSVVGAAEAL FLTPQTITGQ IKALEGRLGG KLFKRRGRGL
VPSELGQLVF RYADKMFMLS QEMLDIVNYR KESHLLFDVG VADALSKRLV SQVLETAVVE
HEKIHLRCFE STHEMLLEQL SQHKLDMILS DCPVDSSQQE GLFSVKLGEC SVSFYCRQPV
PDLPFPASLQ QKRLLIPGRR SMLGRKLLNW INSKGLKVEV LGEFDDAALM NAFAVYHDAI
FVAPTIYAAD TYANDSEIIE IGRLDNVQEE YYVIFAERMI QHPAVQRVCN KDFSALFNC
|
|---|
| |