| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A0738 |
|---|
| Symbol | rhaR |
|---|
| ID | 5799200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 752195 |
|---|
| End bp | 753067 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641338736 |
|---|
| Product | transcriptional activator RhaR |
|---|
| Protein accession | YP_001605314 |
|---|
| Protein GI | 162420723 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.0386443 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGCAC CACTGCTGTT AGAAAGCCGG GATTATTTAC TCTCGGAACA GATGCCGGTG
GCGGTAACCA ATCGATACCC GCAGGAAACC TTCGTAGAGC ATACCCATCA ATTTTGTGAA
ATTGTGATTG TCTGGCGGGG AAATGGTTTA CATGTCCTGA ATGACCACCC TTATCGCATT
ACCTGTGGGG ACGTTTTTTA TATTCAAGCC GCAGACCATC ATAGCTACGA ATCCGTACAT
GATTTGGTAT TAGATAATAT TATCTATTGC CCAGAGCGAC TCCACCTGAA TGCGCAATGG
CATAAGTTAC TGCCGCCTTT GGGACCTGAA CAGAATCAGG GCTATTGGCG GTTAACGACA
CAAGGCATGG CGCAGGCACG GCCCATCATT CAACAGTTAG CGCAGGAATC GCGCAAGACG
GATTCCTGGT CGATACAACT GACTGAAGTC CTGTTATTGC AACTTGCCAT TGTGCTGAAA
CGCCATCGCT ATAGAGCTGA GCAAGCTCAC TTACTGCCCG ATGGCGAGCA GCTTGATTTA
ATCATGTCTG CGTTGCAGCA AAGTCTGGGA GCCTATTTTG ATATGGCTGA TTTCTGCCAT
AAAAATCAGT TGGTTGAACG TTCTCTCAAG CAACTGTTCC GCCAGCAGAC CGGCATGAGT
ATCAGCCACT ACCTACGCCA GATTCGCTTG TGTCATGCCA AGTGTTTATT ACGCGGCAGT
GAGCATCGTA TCAGTGATAT CGCCGCTCGC TGTGGGTTTG AGGACAGTAA CTATTTCTCG
GCTGTTTTTA CCCGTGAAGC CGGTATGACC CCACGAGATT ATCGCCAGCG CTTTATCCGC
TCCCCGGTAT TACCCGCTAA AAATGAACCG TGA
|
|---|
| Protein sequence | MRAPLLLESR DYLLSEQMPV AVTNRYPQET FVEHTHQFCE IVIVWRGNGL HVLNDHPYRI
TCGDVFYIQA ADHHSYESVH DLVLDNIIYC PERLHLNAQW HKLLPPLGPE QNQGYWRLTT
QGMAQARPII QQLAQESRKT DSWSIQLTEV LLLQLAIVLK RHRYRAEQAH LLPDGEQLDL
IMSALQQSLG AYFDMADFCH KNQLVERSLK QLFRQQTGMS ISHYLRQIRL CHAKCLLRGS
EHRISDIAAR CGFEDSNYFS AVFTREAGMT PRDYRQRFIR SPVLPAKNEP
|
|---|
| |