| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A0670 |
|---|
| Symbol | |
|---|
| ID | 5799132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | + |
|---|
| Start bp | 673066 |
|---|
| End bp | 675444 |
|---|
| Gene Length | 2379 bp |
|---|
| Protein Length | 792 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641338671 |
|---|
| Product | fimbrial usher protein |
|---|
| Protein accession | YP_001605252 |
|---|
| Protein GI | 162418709 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0189299 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.787892 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTCGCCC GTTGTATTAA TCTCCAGTGT ATCGCATTCT TATTCTCTTT TTTTCCTACG
CTGGCTTTCC CTGTCACAGA AAAGGGTGAG GTGGTTTTTG ACATAGAAAC GCTGGAGAGA
TTAGGTTATT CAGCTGAATT GGCAAAATTC TTCAGCGGTC AGGATAGATT TCTACCCGGC
CAACATGATG TCACTATCAT TATTAATGCC AGCAAGACCT ACCGTATTGC AGCGACCTTC
GATAGCGAAG GGAAACTGTG TATGGATAAA GCATTACTGA TGGCCTTGAA ATTACGAAAT
ACAGAGAGTG ACGGCAGTTG TGAGAATATG GAAGCCCGGT GGCCGGGTAT GGTTGTTAAA
CTCTTTCCCG GCCAGTTCCG GGTGGAAATA ACATTGCCGC AAGAGGCGTT TGATCCCGAA
ATGGAAGGAA GTGAGTATCA GCAAGGAGGG CATGCACTAT TGCTTAATTA CAATATCTTT
GGCCAACGGG TCGAAAGTAA CAATAGCCGC TTTAATCTTG TTCAGGGGCA ATTTGAACCG
GGGATTAATT TTAAAAATTG GGTACTGAGA AACCGAGGTT CCTACAGTTA TAATCAAGGA
GTGAGCCAAT ACTATAATCA GGAAACCTCT GCTTTACGCG CGGTTGAATC ATTGAAATCC
GTGGTTCAAC TGGGTGAATT TGGTTTAGTG GGTAACACCT TTTCTGGTTT ACCCGTAACC
GGCATTCAGT TGTATTCCGA TAACGCACAA CGGGATGATA CACAATTGAT CGTACCCATC
GAGGGGATTG CCAATACCAA TGCCACCATT GAAATCCGTC AGCGTGGGCG GGTTATTTAT
CGTACCATAG TGGCACCAGG TCCTTTTTCG TTATCCAATA TCAGTAACTT CTCAAGTGGT
GTTAACACCG ATGTCAGTAT TATCGAAGAG GATGGCACTC AACAGAATTT TACGGTGACG
AGCGCCCTTG ATATTAACGC TGAACAACAG GCATCCATCT ACCAACTGGC CGTGGGCCGT
TACCGGGACA TGTTTACCGG TGAGGACAGG CCGTCACCGC TGCTGCTTTC CGGAGAAATG
TCATTCAATC CGGCGGCTAC CTTTTATATG ACGTCGGCTG GGTTACTGTC CTCTGGCTAT
CAAAATATCC GTGTGCAAAA TCTTTACAGT GGATGGGATC AGGCCTGGTT TTCAGCGGCA
GCAAGTTATG CTAATACCAA AGATGCAGGA CAGGGATACC AATTTAGCGT TCAGAATCAG
ATGACGATTA ACGGTAATTT TGGTGTTTCA TGGTCCTCGG TTTATGGCTC GGCCAATTAC
TGGTTACCGG ATGATGCCCT AAGCAGTAGC AATAATCTGA ATGACCTGAT GTTTGGAAAA
TTAAAAAATG CAACGTCGGT AGCCGTGAGC TGGGTGCACC CACGTTGGGG GGCATTCTCC
TATGCTTTAT CAAATAATAT GTATTATCAG GCTTCTGGTC GTACTTACCA TATTTTCTCA
ATTAGCGAAC AATTTGGCCG GGCGACTACC ATCTTGAGTT CTCAATTAAG TTCGCAAGGG
CAAAATTCGC TCTATGTTGG TATCAATATG CCATTGGGTA ATGGGACGTT AAGTGGCCGG
GTGCAACGTA ACAATGGCAA TGTGGCACTT GGTAGTACTT ATCAAGGGCG ATGGGGTGAC
AACAAAGATT ATTCGGTAGG GATCAGCGGT GACAATAGGC AACGGCGTAT CAATGGTTCG
ATGAATATAA GGACGGCCTA TTCACAATTA ACCGGTGGGG TTTCTCAAGC GACAAACAAT
AGCCGGTCTG CATATCTGTC ATCGCGTGGT TCAGTGGCTT ACGTGAATAA CACCTTTGCC
ACATCGTCGT CATCGGTTGG CGATACTTTT GCGGTGGTGA ACATACCCAA CCAACCCGGT
TTGCGCGTTT CATCGCCGAG CAGCGGTATT GCGATTACGG ATTATGCTGG GATAGCCTTG
CTGCCATTAG TGAGGCCTTA CACCGCTTCG AAAGTACAAA TAAGCACGCA AACATTGCCG
CTGAATATTC GGCTTAATAA CACCAGTGCC GATTTGCTGA TGACTCGAGG CTCGGTAGCA
ACCCATCATT TTGAGACAAC AGAAACCCGC CAATTGCTGC TAACCATCCG TGGTAGTGAT
GGTGAAATGC TGCCGATTGG TGCCAATGTA TTGGATGAAA AAGGTAACTT TCTGGGGACG
ATTATCGGTG ACGGAAACTT TATGCTGGAA AATAAGGCGA TTGGCGTGAC ATTACGTGTT
AAGGCAAATA ACCGCGATGA ATGTCGCGTT AACTACCGTG AACCTGAAAA ATTTGACCCC
GATGTATTGT ATGAAGTTGC CGATGCGGTC TGTCAGTAA
|
|---|
| Protein sequence | MVARCINLQC IAFLFSFFPT LAFPVTEKGE VVFDIETLER LGYSAELAKF FSGQDRFLPG
QHDVTIIINA SKTYRIAATF DSEGKLCMDK ALLMALKLRN TESDGSCENM EARWPGMVVK
LFPGQFRVEI TLPQEAFDPE MEGSEYQQGG HALLLNYNIF GQRVESNNSR FNLVQGQFEP
GINFKNWVLR NRGSYSYNQG VSQYYNQETS ALRAVESLKS VVQLGEFGLV GNTFSGLPVT
GIQLYSDNAQ RDDTQLIVPI EGIANTNATI EIRQRGRVIY RTIVAPGPFS LSNISNFSSG
VNTDVSIIEE DGTQQNFTVT SALDINAEQQ ASIYQLAVGR YRDMFTGEDR PSPLLLSGEM
SFNPAATFYM TSAGLLSSGY QNIRVQNLYS GWDQAWFSAA ASYANTKDAG QGYQFSVQNQ
MTINGNFGVS WSSVYGSANY WLPDDALSSS NNLNDLMFGK LKNATSVAVS WVHPRWGAFS
YALSNNMYYQ ASGRTYHIFS ISEQFGRATT ILSSQLSSQG QNSLYVGINM PLGNGTLSGR
VQRNNGNVAL GSTYQGRWGD NKDYSVGISG DNRQRRINGS MNIRTAYSQL TGGVSQATNN
SRSAYLSSRG SVAYVNNTFA TSSSSVGDTF AVVNIPNQPG LRVSSPSSGI AITDYAGIAL
LPLVRPYTAS KVQISTQTLP LNIRLNNTSA DLLMTRGSVA THHFETTETR QLLLTIRGSD
GEMLPIGANV LDEKGNFLGT IIGDGNFMLE NKAIGVTLRV KANNRDECRV NYREPEKFDP
DVLYEVADAV CQ
|
|---|
| |