| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A0159 |
|---|
| Symbol | speC |
|---|
| ID | 5798623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 167735 |
|---|
| End bp | 169897 |
|---|
| Gene Length | 2163 bp |
|---|
| Protein Length | 720 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641338181 |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | YP_001604788 |
|---|
| Protein GI | 162421702 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0000171989 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACACTAT TAAAAATAGC AACAAGCGCC CGCCTGGCTT CTTATGTAGA AACTCAGCGC
GGAGTGGTGT ACCTCAATCA GACTGACTTT ACTGATGTTG CCGCGGTGGT AATGTCGGTT
GAAGATGCAA ATGCGGGTAT ATTGTCAATG CTGCATGACC TTGGTTTTGC TATTCCTGCG
TTTATTGCCG TGACGGCAGA ACAGACGGTC TCTGCTGATT ATTTGCCCTT GATTAAAGGT
GTCATTACGC TTGGTGAAGC AAATAAAGCT TTTTATAACG CTCAGGTAGA AGCTGCCGCC
AGTGAATATC AAAAGAATCT CTTACCGCCT TTTTTCTCAA CACTGAAAAA ATATGTCGAG
ATGAATAACT CGACCTTTGC TTGCCCTGGC CATCAGGGGG GCGAATTTTT TCGCAAGCAT
CCTGCAGGAC GCCAGTTTTT TGAATTCTAC GGTGAGACGA TTTTTCGTTC AGATATGTGT
AATGCCGATG TCAAATTAGG TGATTTACTT ATCCATGAAG GGGCGGCAAA AGATGCACAG
AAATATGCTG CTAAGGTATT CAATGCCGAT AAAACCTATT TTGTCCTGAA CGGTACCTCG
GCGGCCAACA AGGTCGTGAC CAACGCTTTA CTGACCCGTG GTGATTTAGT GTTGTTTGAC
CGCAATAACC ATAAATCTAA CCATCATGGT GCGCTGATCC AGGCGGGCGC GACGCCGGTT
TATCTGGAAA CGGCCCGTAA CCCCTTTGGT TTTATTGGTG GTATTGATGC GCACTGCTTC
AATGAAGATT ATTTACGTCA ACAACTGCGT GAAGTTGCTC CCGAGCGTGC AGAAGAGGCT
CGGCCATTCC GATTAGCGAT CATTCAATTG GGTACCTACG ACGGTACGGT ATATAACGCC
CGCCAAGTAG TTGATAGTAT TGGTCATTTA TGCGATTACA TTTTGTTTGA TTCTGCTTGG
GTGGGTTACG AACAATTTAT TCCGATGATG AAGGATTTCT CACCGTTATT ACTGGAATTA
AATGAAAATG ACCCTGGGAT TATTGTGACT CAATCGGTAC ACAAGCAGCA GGCCGGTTTT
TCTCAGACCT CTCAGGTACA TAAAAAAGAT AATCACATTA AAGGACAGAA ACGTCACTGT
AACCATAAGC GTTTTAATAA TGCCTTTATG TTGCATGCAT CGACCAGTCC GTTTTATCCA
TTATTTGCGG CATTGGATGT TAATGCCAAA ATACACTCTG GTGACAGTGG CCGCCGTATG
TGGATGGATT GTGTAAAACT CGGTATTGAA ACCCGTAAAT CGTTATTGGC ACGCTGTTCG
ATGTTACGGC CTTTTATTCC TCCAGTTGTT GGCGGTAAAA ATTGGCAAGA TTATGCTACT
GATGTGATTG CCAATGATGC GCGCTTCTTT AATTTTGTCC CAGATGAACG CTGGCATGGA
TTTGAGGGAT ATAACCAAGA TCAGTATTTG GTTGATCCGT GCAAATTATT GCTGACGACG
CCGGGAATTG ATGCCAGTAC TGGCCGATAT ACTTCGTTTG GTATTCCGGC GGCTATTTTG
GCGACTTTCC TGCGTGAAAA TGGAATTGTG CCAGAAAAAT GTGATCTTAA CTCGATCCTA
TTCCTGCTGA CCCCGGCAGA AAATACCGCC AAAATGGCAC ACCTGGTGGA TATGTTGGTG
CAGTTTGAAC GCTATGTTGA ACAAGATGCG AAGCTGTGTG ATGTATTACC GACGATCTAT
CGTAAGAATG AAGAGCGTTA TCACGGTTAT ACCTTGCGTC AGTTATGCCA AGAAATGCAT
GACCTGTACG TCAGCCATGA CGTTAAGCAA TTGCAAAAGG ATATGTTCCG TAAAGCCAGT
TTCCCGCAGG TAGTCATGAA CCCGCAAGAC GCCAATATTC AGTTTATCCG CGATAATATT
GAGTTGATTC CTATTGCTGA AGCTGAAGGC CGTATTGCCG CCGAAGGCGC TTTGCCTTAT
CCACCGGGTG TGCTGTGTGT GGTGCCCGGT GAAGTGTGGG GTGGGGCGGT TCAGCGTTAT
TTTCTGGCGC TGGAAGAGGG GATTAACTTA CTGCCGGGCT TTTCACCTGA GTTACAGGGC
GTTTATATCG AAAAAGGTGA TGTGTCTTGG CGGCGTATCT TTGGTTATGT GATTACGCAA
TAG
|
|---|
| Protein sequence | MTLLKIATSA RLASYVETQR GVVYLNQTDF TDVAAVVMSV EDANAGILSM LHDLGFAIPA
FIAVTAEQTV SADYLPLIKG VITLGEANKA FYNAQVEAAA SEYQKNLLPP FFSTLKKYVE
MNNSTFACPG HQGGEFFRKH PAGRQFFEFY GETIFRSDMC NADVKLGDLL IHEGAAKDAQ
KYAAKVFNAD KTYFVLNGTS AANKVVTNAL LTRGDLVLFD RNNHKSNHHG ALIQAGATPV
YLETARNPFG FIGGIDAHCF NEDYLRQQLR EVAPERAEEA RPFRLAIIQL GTYDGTVYNA
RQVVDSIGHL CDYILFDSAW VGYEQFIPMM KDFSPLLLEL NENDPGIIVT QSVHKQQAGF
SQTSQVHKKD NHIKGQKRHC NHKRFNNAFM LHASTSPFYP LFAALDVNAK IHSGDSGRRM
WMDCVKLGIE TRKSLLARCS MLRPFIPPVV GGKNWQDYAT DVIANDARFF NFVPDERWHG
FEGYNQDQYL VDPCKLLLTT PGIDASTGRY TSFGIPAAIL ATFLRENGIV PEKCDLNSIL
FLLTPAENTA KMAHLVDMLV QFERYVEQDA KLCDVLPTIY RKNEERYHGY TLRQLCQEMH
DLYVSHDVKQ LQKDMFRKAS FPQVVMNPQD ANIQFIRDNI ELIPIAEAEG RIAAEGALPY
PPGVLCVVPG EVWGGAVQRY FLALEEGINL LPGFSPELQG VYIEKGDVSW RRIFGYVITQ
|
|---|
| |