Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpAngola_B0059 |
Symbol | yscH |
ID | 5798229 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pestis Angola |
Kingdom | Bacteria |
Replicon accession | NC_010157 |
Strand | + |
Start bp | 39274 |
End bp | 39771 |
Gene Length | 498 bp |
Protein Length | 165 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641337870 |
Product | type III secretion protein YopR |
Protein accession | YP_001604490 |
Protein GI | 162417765 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02509] type III secretion effector, YopR family |
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Plasmid Coverage information |
Num covering plasmid clones | 75 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 93 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGTTA CCCTTAATAG AGGTTCCATT ACATCGTTGA TGTCTTCGTC TCAGGCAGTC TCTACGCTAC AACCGGTAGC ATCTGAGCTG AAAACACAAC TGGAGAATAA GCTAAAAAGT GAATCCGCTG AAAAGACACG GGAAGTTCTG TGGCAGCAAT ATTATGCCAG TAACCCTCCT GACCATGCCG TTCTTGAGGT TTTGGCGACG CCAGTACGTG AGGCGTTACT GGCGCGTTTC GGTCAACATC AAGGGTCTGT TGTACCGGCT ATAGATTTAC CTGAATTGCG TAGTGTATTG CAGCAGTTTG ACTCGTTTGG TAAGCGGTGG GAAGCAATAT TGCTCCAAGT ATTAGAGGGT ATAAAACCCA ATGAGAGCCA GGTTGGATTA CCTTATTTAT CAGAGTTAAT AAATAAAGAA TTAATGATCC TATTACCGTC TAACTCGATT GTAGATAGCC TACTTCATAA CAGCCATCAA ATTGATATGG ATACATAA
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Protein sequence | MTVTLNRGSI TSLMSSSQAV STLQPVASEL KTQLENKLKS ESAEKTREVL WQQYYASNPP DHAVLEVLAT PVREALLARF GQHQGSVVPA IDLPELRSVL QQFDSFGKRW EAILLQVLEG IKPNESQVGL PYLSELINKE LMILLPSNSI VDSLLHNSHQ IDMDT
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