| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_B0035 |
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| Symbol | lcrD |
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| ID | 5798315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pestis Angola |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010157 |
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| Strand | - |
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| Start bp | 21323 |
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| End bp | 23437 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641337846 |
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| Product | type III secretion protein LcrD |
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| Protein accession | YP_001604466 |
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| Protein GI | 162417764 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 79 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCCC ATGATCTTGA GTGGCTAAAT CGTATTGGCG AGCGTAAAGA TATCATGCTG
GCAGTGCTGC TGTTAGCTGT GGTATTCATG ATGGTCTTAC CACTCCCCCC CCTTGTGTTG
GACATTCTGA TTGCTGTTAA CATGACCATT TCAGTGGTGT TGTTAATGAT AGCGATCTAT
ATCAACTCTC CTTTACAATT TTCAGCTTTC CCTGCGGTGC TACTCGTTAC CACGTTATTT
CGTCTCGCAC TTTCAGTTAG CACCACCCGC ATGATCCTGC TACAAGCTGA TGCGGGGCAG
ATTGTTTACA CCTTTGGTAA TTTCGTCGTT GGCGGTAACC TCATCGTCGG GATTGTCATC
TTCCTGATCA TCACTATTGT GCAATTTTTA GTGATAACGA AAGGCTCAGA ACGTGTAGCA
GAAGTTAGTG CCAGATTCTC TCTTGATGCG ATGCCGGGTA AACAGATGAG TATCGATGGC
GATATGCGAG CCGGGGTGAT CGATGTCAAT GAAGCGCGTG AGCGACGCGC GACGATAGAA
AAAGAAAGCC AAATGTTCGG TTCTATGGAC GGCGCCATGA AGTTCGTCAA AGGGGATGCA
ATAGCCGGCC TCATTATTAT CTTTGTCAAT ATATTAGGCG GCGTCACCAT TGGTGTTACC
CAAAAAGGAT TAGCGGCCGC TGAGGCACTG CAACTCTATT CCATCCTCAC TGTCGGGGAT
GGGATGGTTT CTCAGGTACC TGCCCTGCTG ATAGCTATTA CCGCGGGTAT TATCGTCACC
CGCGTCTCTT CAGAAGATTC ATCAGATCTG GGTAGCGATA TTGGCAAACA GGTTGTCGCT
CAGCCTAAAG CCATGCTAAT TGGTGGCGTA CTGCTGTTGC TCTTTGGTCT TATCCCCGGC
TTCCCAACAG TCACCTTTCT GATTTTGGCG CTATTGGTAG GCTGTGGTGG TTATATGCTC
AGCCGTAAGC AGAGTCGTAA TGACGAGGCT AATCAAGACC TGCAATCCAT ACTGACGAGC
GGTTCTGGCG CCCCGGCTGC TCGAACCAAA GCCAAAACAA GTGGGGCAAA CAAGGGCCGA
CTAGGGGAAC AAGAAGCATT TGCTATGACG GTTCCCTTGC TGATTGATGT AGATTCAAGC
CAACAGGAAG CACTGGAAGC GATAGCACTA AATGATGAGC TGGTTCGAGT GCGCCGTGCT
CTTTATCTTG ATCTTGGCGT ACCTTTCCCT GGGATCCATC TGCGTTTTAA TGAGGGGATG
GGTGAAGGCG AATATATTAT TTCCTTGCAA GAAGTTCCAG TGGCGCGAGG TGAGCTTAAG
GCAGGTTATT TACTCGTGCG TGAATCCGTC AGCCAACTCG AATTACTGGG TATACCCTAT
GAAAAAGGGG AACATTTGCT ACCCGATCAG GAAGCTTTCT GGGTATCGGT TGAATATGAG
GAGCGCCTGG AAAAGTCTCA ACTGGAATTT TTCTCTCATT CCCAAGTTCT AACCTGGCAT
CTTTCTCATG TCCTACGTGA ATATGCCGAA GATTTCATTG GTATCCAAGA AACCCGCTAT
CTGCTCGAAC AGATGGAAGG AGGCTATGGC GAATTAATTA AAGAAGTACA AAGAATCGTT
CCCTTACAAC GAATGACCGA AATATTACAA CGATTAGTTG GAGAAGATAT TTCTATCCGT
AATATGCGAT CTATTCTTGA AGCTATGGTG GAATGGGGAC AAAAAGAGAA AGACGTCGTT
CAACTCACAG AATATATCCG CAGTAGTCTA AAACGTTATA TCTGCTACAA ATACGCTAAT
GGCAACAATA TATTGCCGGC TTATCTTTTC GATCAAGAAG TAGAAGAAAA AATTCGTAGC
GGTGTGCGCC AAACCAGTGC AGGGAGTTAT TTGGCATTGG AGCCTGCTGT TACCGAGAGT
TTACTTGAAC AAGTTCGCAA GACTATTGGC GATCTATCGC AAATCCAGAG TAAACCGGTG
CTGATTGTTT CTATGGATAT TCGTCGCTAT GTGCGCAAAC TGATTGAGAG CGAATACTAT
GGCTTGCCGG TACTTTCATA CCAAGAGCTG ACTCAGCAGA TTAATATCCA ACCACTTGGA
CGAATTTGCT TATGA
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| Protein sequence | MNPHDLEWLN RIGERKDIML AVLLLAVVFM MVLPLPPLVL DILIAVNMTI SVVLLMIAIY
INSPLQFSAF PAVLLVTTLF RLALSVSTTR MILLQADAGQ IVYTFGNFVV GGNLIVGIVI
FLIITIVQFL VITKGSERVA EVSARFSLDA MPGKQMSIDG DMRAGVIDVN EARERRATIE
KESQMFGSMD GAMKFVKGDA IAGLIIIFVN ILGGVTIGVT QKGLAAAEAL QLYSILTVGD
GMVSQVPALL IAITAGIIVT RVSSEDSSDL GSDIGKQVVA QPKAMLIGGV LLLLFGLIPG
FPTVTFLILA LLVGCGGYML SRKQSRNDEA NQDLQSILTS GSGAPAARTK AKTSGANKGR
LGEQEAFAMT VPLLIDVDSS QQEALEAIAL NDELVRVRRA LYLDLGVPFP GIHLRFNEGM
GEGEYIISLQ EVPVARGELK AGYLLVRESV SQLELLGIPY EKGEHLLPDQ EAFWVSVEYE
ERLEKSQLEF FSHSQVLTWH LSHVLREYAE DFIGIQETRY LLEQMEGGYG ELIKEVQRIV
PLQRMTEILQ RLVGEDISIR NMRSILEAMV EWGQKEKDVV QLTEYIRSSL KRYICYKYAN
GNNILPAYLF DQEVEEKIRS GVRQTSAGSY LALEPAVTES LLEQVRKTIG DLSQIQSKPV
LIVSMDIRRY VRKLIESEYY GLPVLSYQEL TQQINIQPLG RICL
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