| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | COXBURSA331_A1784 |
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| Symbol | rpoD |
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| ID | 5794524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Coxiella burnetii RSA 331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010117 |
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| Strand | + |
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| Start bp | 1628652 |
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| End bp | 1630748 |
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| Gene Length | 2097 bp |
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| Protein Length | 698 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641331143 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001597431 |
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| Protein GI | 161831165 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.101726 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAGCC GTAAAAAGAA ATCCAGCGTT ACCAAAACTA AGAAAAAAAC AACTGGTAAA
AAAGCCCGTG TAACTGCTAA AGCTAAACCT TCCGTAAAGT CAAAACTTAA AACGGTAAAG
CGCGCGCCGG CAAAACCGAA ATCGGTGACA GTGGCTAAAA CTAAGTCTAA AAAAGAAAAG
GCTAAAGTCG TGTCACAGCC ATTACCTAAA ACTGCTGAGA AAAAACCTTC TGCGCCGCCT
TCAGAAACTC AACAACCCAA GATAGGAGAA AACGCAGCAG AAAGCCAACG TTTAGGCTTT
GGCGCACTCC TAGAAGAAGC CAAAAATAAG GGCTACCTGG TACACGAAGA TTTAATTAAC
CTTCTCCCTA ACGATTACGC AGATCCTTCC CAAATGGAAG GCATTATCGG TCGTTTAACC
GAAATGGGTA TTAAAGTTTT CGAAATTCCT CCTGACGCCG ATTCCCTGCT TTTGGAGGAA
GATACCCAAT CCGACGATGA CGAGATCAAC GAGGACGTGG CCGAAGTATT AGCGACAGAA
ACCCGAACTA CTGATCCCGT TCGCATGTAC ATGCGTGAAA TGGGGAGCGT GGAGTTGCTA
ACACGGGAAG GCGAAATTGT CATCGCCAAA CGCATTGAAG AAGGCATCCG CCAAGTCATG
GGCGCCGTGG TCCAATACCC TGAACTTATT GAAAAATTTA TTAAAGAATA TGACACCATC
GTCGCTACTG AAGGCCGCTT AAGTGATCTG CTTATCGGTT TTTTTGACGA AGAAGAATCG
ACAGCCTCCC CTGTTGCTCC GGAAGCCCGT GATAAAGAAG CTGAAACTTC GGATGAGGAT
GACGGAGGAG AAGGTGGCAG TGATGAATTC GGCGAGAGCG GGCCTGACCC CCTCATTACT
CAACAACACA TGGAAGAGCT TAAAAAGTTG TACGGCCGCT ATCAAAACGC CATTAAACGT
TATGGCAAAA AAGCGCCGGC AACGCTCAAA CATCAAAAAG CGTTGGCTGA GTTGTTTTCA
ACCTTTAAGC TTTCTATCAA GCAATTTAAT CGGCTCACCG GTCAATTACG TCGAATGCTA
AGAGCCGCGC GCGCTCAAGA ACGTTTAATC ATGAGTTATT GCGTGGTCAA AGCGAAAACG
CCACGTAAAA AATTTATTGC TTCCTTTCCG CATAATGAAA CCAACATGAA ATGGTTGGAA
CAATACAAAA ATGAAAACAA AGAACAAGCG AAACGACTGG AAAAATACAG CAAAGAAATC
TACCGCGCTC AACGAAACCT GGCGCAACTG GAAGAACAAA ACAATTTAAA CATTCAAGAA
ATCAAAGAAA TTAATCGTCG CGTTGCCATC GGCGAGGCAA AATCACGCCG TGCTAAAAAA
GAAATGATCG AAGCTAATTT ACGTCTGGTT ATTTCGATCG CAAAAAAATA CACCAATCGG
GGGCTGCAAT TTCTGGATCT CATCCAGGAA GGAAACATTG GCTTAATGAA AGCCGTTGAC
AAATTTGAAT ACCGCCGGGG TTATAAATTT TCAACCTATG CCACGTGGTG GATTCGCCAA
GCAATTACGC GTTCGATCGC CGACCAAGCC CGGACTATCC GCATTCCTGT GCACATGATT
GAAACGATCA ATAAACTCAA TCGCATCAGT CGACAAATCC TGCAAGAAAC CGGAATAGAA
GCCACGCCCG AAGAACTGGG CCGACGGATG GATATGCCGG AAGAAAAAGT CAGGAAAGTT
TTAAAGATCG CAAAAGAACC TATTTCCATG GAAACGCCTA TTGGCGAAGA TGAAGATTCT
AACCTCGGTG ATTTTATTGA AGACATCAAC ATGGAATCAC CCGTGGATTT CGCCACTTCG
GCCGGCCTCA TGGAAGCCAC GCGAGAAATT TTGTCTACGC TTACCCCGCG CGAAGCCAAA
GTATTGCGGA TGCGTTTCGG TATCGACATG AATACTGATC ACACGCTGGA AGAAGTAGGC
AAACAATTCG ACGTCACGCG AGAGCGGATT CGCCAAATTG AAGCCAAAGC CTTACGCAAA
CTGCGCCACC CCAGCCGCGC TGAAAAATTA CACAGTTTCA TAGAAGTTGA GGAATAA
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| Protein sequence | MPSRKKKSSV TKTKKKTTGK KARVTAKAKP SVKSKLKTVK RAPAKPKSVT VAKTKSKKEK
AKVVSQPLPK TAEKKPSAPP SETQQPKIGE NAAESQRLGF GALLEEAKNK GYLVHEDLIN
LLPNDYADPS QMEGIIGRLT EMGIKVFEIP PDADSLLLEE DTQSDDDEIN EDVAEVLATE
TRTTDPVRMY MREMGSVELL TREGEIVIAK RIEEGIRQVM GAVVQYPELI EKFIKEYDTI
VATEGRLSDL LIGFFDEEES TASPVAPEAR DKEAETSDED DGGEGGSDEF GESGPDPLIT
QQHMEELKKL YGRYQNAIKR YGKKAPATLK HQKALAELFS TFKLSIKQFN RLTGQLRRML
RAARAQERLI MSYCVVKAKT PRKKFIASFP HNETNMKWLE QYKNENKEQA KRLEKYSKEI
YRAQRNLAQL EEQNNLNIQE IKEINRRVAI GEAKSRRAKK EMIEANLRLV ISIAKKYTNR
GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI
ETINKLNRIS RQILQETGIE ATPEELGRRM DMPEEKVRKV LKIAKEPISM ETPIGEDEDS
NLGDFIEDIN MESPVDFATS AGLMEATREI LSTLTPREAK VLRMRFGIDM NTDHTLEEVG
KQFDVTRERI RQIEAKALRK LRHPSRAEKL HSFIEVEE
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