Gene COXBURSA331_A1291 details

Gene Information

• Locus tag: COXBURSA331_A1291
• Symbol: secD
• ID: 5793834
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Coxiella burnetii RSA 331
• Kingdom: Bacteria
• Replicon accession: NC_010117
• Strand: -
• Start bp: 1165144
• End bp: 1167012
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 641330717
• Product: protein-export membrane protein SecD
• Protein accession: YP_001597015
• Protein GI: 161830149
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.00000000000000635694
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCGAT ATCCGTTGTG GCGTTATATA TTACTCGCCG TACTCATCAT CATCAGTTTG 
ATTTATGCGT TACCTAACTT GTATGGGGAA GATCCGGCTA TTCAAATCTC AGCTAAGAAT 
AGTGCTCCCA TTGAGGCTGT TGAAGAAAAA ATCAAATCAA CCTTAAACGC TCAACATATT 
TCTTATCTTT CGGTTCGGCC TGTCGATAAT ACCGTTTTGG TTCGCTTTCC CAGTACCGAA 
GATCAGCTTA AAGCGCAGGA TGTGATTCAG GCTGTCGTTG GTACTGATTA TTCCGTTGCA 
TTGAATTTAG CGCCGCGGAC GCCCCGATGG TTACAGGCGA TCGGCGCAAA ACCGATGCGC 
TTAGGATTGG ACCTGCGCGG CGGTATCCAT TTCTTATTAG ATGTGGATGT TGGCGCCATG 
GTGAAAGCCC AGGAAACGGG CGATTTACAT ACCATGTCAA CGGCGCTTCG CGAAGCCCGC 
ATTCGCTATA CAGAGATGTC AAGCGACCAA AATGGCGTAA TGATCCATTT CCGTGACCAA 
GCAGCCCGTG ATCAGGCGCG CACGCTCTTG GAAAAACAAT TTCCTGACTA CCGTTTTGAA 
GCCACGGCAT CGAGTCTTCG AGGCACTATT TCAATAACGG CATTGCACCA AATCCAGCAA 
AATGCCGTGG ATCAAATAAC AACGATCCTC AGAAACCGTG TTAATGAGTT AGGCGTTGCG 
GAACCGGTTA TCCAACAGCA AGGAGAAAGC CAAATCAGCG TTGATTTGCC TGGCATTCAA 
GACACGGCTC GAGCCAAAGA TATTATTGGT AAAGTAGCGA CCATTCGTTT GCAATTGGTG 
GATGTTGAAC ACGATGCTGA AACAGCCTCG AGCACGGGGA CTGTGCCTTT TGGTTCAAAA 
TTATATACCT TCGAAAAGCA GCCCGTACTA TTGAAGCAGC AGGTCGTGTT AAAAGGAACT 
TCGATTATTA ACGCCTCGAG TGTTATTGGA GAAGATGGCC GCCCAGCGGT GCGAGTTCGG 
GTGAGTGGCA GCGATGTGCC TTCTTTTAAT CGAATTACGG GGGAAAACGT CGGCAAACCT 
TTAGCCGTTG TTTACGTAGA AACTCAAACT ACGCGTCATT TAGTCGATGG AAAGGTGGTG 
ACTCAACACC GCCAAATTGA GCGTATTATT AATATAGCGA CGATTCAAAC TGCTCTTGGA 
AATGATTTCC AAATAACTAA CTTATCTACG ATGGATTACG CAAAAAATTT AGCCTTGTTA 
TTACGCTCTG GCGCTTATCC TGTCCCCGTT GATTTTGTGC AAGAACGAGT GGTGGGCCCG 
AGTTTGGGCC AAGAAAATAT CCACATGGGG GTTTTATCTA CCGAAATTGG CGCTTTATTG 
GTGATTGTGT TTATGGCGTT CTACTATCGG CTGTTCGGCG TCATTGCTGA CATCGCGTTA 
GCTTTGAATA TCGTCTTTAT TGTTGCGGTG TTATCCATTT TGGGTGCTAC CCTCACTTTG 
CCCGGTATTG CGGGTATTGT GTTAACAGTG GGGATGGCTG TCGATGCGAA TGTGTTAATT 
AACGAGCGAA TACGAGAAGA GTTGCGCAAT GGGATGTCGC CGCAAGCGAG TATCAAAGCT 
GGATACGATC GGGCTTTTGC TACCATTGTG GATGCCAATG TGACCACGCT GATTGTAATG 
ATTATCTTAT TTGCTTTAGG CTCGGGGCCA GTCCAAGGCT TTGCTGTGAC GACGACTATT 
GGTTTGTTGT CGTCGATGGT GACAGCGATT TTCTTTACAC GGGCGGTGGT GAATTTAGTG 
TACGGACGGC GCAGAGCTTC ACGTTTGTCT ATTGGGATTA ACGCAAAATC CGCAGAGGCT 
AAGAAGTAA 

 

Protein sequence

MNRYPLWRYI LLAVLIIISL IYALPNLYGE DPAIQISAKN SAPIEAVEEK IKSTLNAQHI 
SYLSVRPVDN TVLVRFPSTE DQLKAQDVIQ AVVGTDYSVA LNLAPRTPRW LQAIGAKPMR 
LGLDLRGGIH FLLDVDVGAM VKAQETGDLH TMSTALREAR IRYTEMSSDQ NGVMIHFRDQ 
AARDQARTLL EKQFPDYRFE ATASSLRGTI SITALHQIQQ NAVDQITTIL RNRVNELGVA 
EPVIQQQGES QISVDLPGIQ DTARAKDIIG KVATIRLQLV DVEHDAETAS STGTVPFGSK 
LYTFEKQPVL LKQQVVLKGT SIINASSVIG EDGRPAVRVR VSGSDVPSFN RITGENVGKP 
LAVVYVETQT TRHLVDGKVV TQHRQIERII NIATIQTALG NDFQITNLST MDYAKNLALL 
LRSGAYPVPV DFVQERVVGP SLGQENIHMG VLSTEIGALL VIVFMAFYYR LFGVIADIAL 
ALNIVFIVAV LSILGATLTL PGIAGIVLTV GMAVDANVLI NERIREELRN GMSPQASIKA 
GYDRAFATIV DANVTTLIVM IILFALGSGP VQGFAVTTTI GLLSSMVTAI FFTRAVVNLV 
YGRRRASRLS IGINAKSAEA KK