| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | COXBURSA331_A0329 |
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| Symbol | rpoC |
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| ID | 5794644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Coxiella burnetii RSA 331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010117 |
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| Strand | + |
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| Start bp | 289625 |
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| End bp | 293869 |
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| Gene Length | 4245 bp |
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| Protein Length | 1414 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641329857 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001596177 |
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| Protein GI | 161829737 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0039128 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGAGACT TAGTAAAACA GCTAAAAAGT GAAAAACACA CGGCTGAATT CGATGCATTG
CGTATCAAGC TGGCATCTCC AGAAGAAGTT CGTTCGTGGT CGTACGGTGA AGTGAAAAAA
CCGGAAACGA TTAATTATCG TACCTTTAAA CCCGAACGCG AAGGATTATT TTGCGCAAAA
ATTTTTGGTC CTATTAAAGA TTACGAATGT TTATGTGGTA AATATAAACG TTTAAAACAT
CGCGGTGTCA TCTGCGAAAA ATGCGGTGTT GAAGTGACCT TAGCAAAAGT GCGTCGCGAA
CGCATGGGTC ATATTGAGCT GGCTTCACCG GTGGCTCACA TTTGGTACCT TAAATCATTA
CCTTCTCGCA TCGGTTTGCT ATTAGACGTG ACGCTGCGTG ATATCGAACG CATTTTATAT
TTTGAAGCTT ATGTAGTGGT AGACCCGGGG ATGACCGATT TAGAACCCCG GCAATTACTT
TCAGAAGAGG CCTACCTAGA TGCCTTAGAA GAATATGGCG ATGATTTTAC GGCCTTGATG
GGCGCGGAAG CCATCCAACG TTTATTGCGT GACATTGATG TTGAAGCAGA AGTGGAAGCC
TTACGCACCG AACTTCAAAC CACGACTTCT GAAACCAAAA CGAAAAAACT AACCAAACGG
CTCAAGGTAT TAAGTGCATT TTTAGAGTCG GGAAATAAAC CCGAATGGAT GATATTAACC
GTATTGCCCG TTTTACCGCC GGATTTACGG CCTTTAGTTC CATTGGATGG TGGGCGTTTT
GCCACCTCAG ATTTAAATGA TCTTTACCGT CGGGTGATTA ACCGTAACAA CCGATTGAAG
CGGTTGTTGG ATCTCAATGC GCCCGACATC ATCGTTCGCA ATGAAAAACG CATGCTACAA
GAAGCGGTCG ACGCATTGCT CGATAACGGC CGGCGCGGAC GAGCCATTTT GGGCTCAAAC
CGCCGTCAAC TGAAATCATT AGCCGACATG ATTAAAGGAA AATCGGGTCG TTTCCGCCAA
AATTTATTGG GTAAGCGAGT CGATTATTCA GGCCGTTCCG TCATCGTCGT TGGGCCTACA
TTGAAATTAC ATCAGGCCGG TTTGCCGAAG AAAATGGCGT TAGAGTTATT TAAACCGTTT
ATCTTTAGTA AATTGCAACT GCGAGGTTTA GCCACTACCG TCAAAGCTGC TAAGAAATTG
GTAGAAAATG AAGGGCCGGA AGTTTGGGAT ATTCTCGAAG AAGTGATTCG CGAACACCCC
ATTTTATTAA ACCGCGCACC CACGCTACAC CGTTTGGGAA TTCAGGCATT TGAACCGGTG
CTGGTGGAAG GAAAGGCCAT TCAATTACAC CCGCTCGTTT GTACAGCCTA TAACGCTGAC
TTTGACGGCG ACCAAATGGC CGTGCACGTC CCATTGACGC TCGAAGCGCA ACTGGAAGCG
CGCTCGTTGA TGATGTCCAC TAATAACGTT TTGCATCCAG CCAATGGTGA GCCGATTATC
GTTCCCTCTC AAGACGTGGT GCTGGGTCTT TATTACATCA CGCGTGACCG CGTTAATGCT
AAAGGAGAGG GCATGCGATT TGCTGATGCC CAAGAAGTGG TCCGCGCTTA CGAAAATGAC
CAAGTGGATT TACACGCTCG GATTACCGTG CGCATCAAAG AAGGCATTTT AAACGAAGCA
GGAGAAATAG AAGAAAGCGA CCGCTTGGTA AATACCGCCG CCGGCCGAAT TTTATTATGG
CAAATTGTTC CTAAAGGGTT GCCGTTCGCA TTAGTGGATC AACCGATGAC GAAAAAAGCG
GTAACAAAAT TACTTGACTT CTGCTACCGC AATTTAGGAC TGAAAACCAC CGTTATTTTT
GCGGATAAAT TAATGTATAT GGGATTTCAT TACGCGACCC ATTCTGGCGT TTCCATTGGG
ATTAATGACC TTGTCGTCCC CGACCAAAAA GAAGCCATTA TATCCCGGGC TGAAGATGAA
GTTCGTGAAA TTGAAAAACA ATATGCTTCC GGTTTAGTGA CTCACGGGGA GCGGCGAAAT
AAAGTGATTG ATATTTGGTC CCGCACCAAT GACCAAGTGG CCAAAGCGAT GATGGAAAAA
ATCGCTGTTG AAAAAGTTAA AGATGCTGAA GGCAAAGAAG TCGCACAAAG CTCTTTTAAT
TCTATTTACA TGATGTCCGA TTCCGGCGCC CGAGGTTCCG CAGCACAAAC TCGCCAATTA
GCGGGAATGC GGGGTTTGAT GGCAAGACCG GATGGCACCA TTATCGAAAC GCCCATTACG
GCAAACTTCC GAGAAGGTTT GAACGTCTTA CAATACTTCA TTTCGACCCA CGGGGCGCGC
AAAGGTCTTG CCGATACCGC GTTGAAAACC GCTAACTCGG GTTATTTAAC CCGGCGTTTA
GTTGACGTGG CTCAAGACTT AGTCGTCACG GAACACGATT GCGGGACGGA AGCTAGTATT
GAAATGATGC CCCATATTGA AGGGGGCGAT GTGGTTGAGC CATTGCGGGA ACGCGTGTTG
GGACGAATAT TGGCAGAGCC CGTAATGGAT CCGAAGTCGA GGAAAGAATT GCTCGCCAAA
GATACTTTTC TGGATGAAAG ACGGGTTGAC ATTCTGGAAG AGCACAGCAT TGACCGAGTA
AGGGTCCGAT CGGCCATTAC CTGCGAGGCG CGTTATGGAA TTTGCTCGAT GTGTTATGGA
CGCGACCTGG CGCGCGGCCA CGTTGTTAAT GTGGGAGAAG CAATTGGGGT GGTGGCCGCC
CAATCCATCG GGGAACCTGG CACGCAGTTG ACCATGCGTA CCTTCCATAT CGGGGGTGCT
GCTTCGCGAG CCACTGCAGC CAATAATATT GGGGTAAAAT CCACCGGCAA AATCAAATTG
CGTAATTTGA AAACCGTTGA GCAAGCGCAA GGGAATTTAG TCGCTGTTTC TCGTTCCGGT
GAATTAGTCG TTCAAGACCT CCAAGGCAGT GAACGTGAAC ACTATAAAGT CCCCTATGGC
GCGACCATCT CCGTACGAGA TGGCGATTCA GTAAAAGCGG GCCAAATCGT GGCGCAATGG
GATCCTCATA CCCATCCGAT CATTACTGAA GTCGCGGGTA CGTTAAGGTT TGTGGATTTG
GTCGATGGGG TCACCATGAA TCGACAAACC GACGAATTAA CCGGCCTTAG CAGTATTGTT
ATCACTTCCA CCAAGCAACG CAGTGCGAGC GGCAAAGAGT TGCGGCCAAT GGTGAAGTTA
GTGGACAAGA ATGATGATGA TCTTTTCTTG CCGGGCGGGA AAGTGCCGGC TCATTACTTC
TTGCCGGAAG GAACTTTTCT TACGAAGGAA GATGGCACAA CGGTCAACAT TGGTGACGTG
CTGGCGCGTA TCCCGCAAGA GACCTCCAAA ACGCGTGATA TCACCGGTGG TCTTCCTCGA
GTAGCCGACC TGTTTGAAGC TCGACGGCCC AAGGATGCCG CTATTCTCGC TGAAATTTCA
GGGGTCGTAA GTTTTGGGAA AGACACCAAA GACAAAGGTC GCTTAATTAT TACGGCGCCC
GATGGCACAA CGCACGAGGA ATTAATTCCA AAATGGCGTC ACGTAAGTGT CTTTGAAGGT
GAAACGGTGG AGAAGGGTGA AGTCATCGCC GATGGCCCTC GGGATCCGCA CGATATTCTT
CGACTATTGG GCGTCAACGC GCTGGCGAAC TACATCGTGA ATGAAGTACA GGAAGTTTAC
CGACTGCAAG GCGTGAAAAT TAACGATAAA CACATTGAAG TCATTGTGCG CCAGATGCTT
CGTAAGGTAA AAATTACTCA GCCGGGTGAT ACTGACTTAT TGCAAAATGA ACAAGTGGAG
CGTACTCGAG TACGCGAAGA AAACGAAAAA ATAATTAAAA AAGATGGCAC AGTGGCCAAG
GTAGAACCGA TTTTACTCGG AATCACTAAA GCGTCCTTAG CTACTGAATC TTTTATATCA
GCGGCATCGT TCCAGGAGAC CACGCGAGTA TTAACGGCGG CCTCTGTGGC AGGTAAACGC
GATGATTTAC GTGGATTAAA AGAGAACGTT ATCGTGGGAC GTCTAATTCC GGCGGGCACC
GGGTTCAGCT ATCATCAGCA GCGACGTGCC GTTGCTGGGA AAAGTGTTGA GGAGAAGGAA
ATAGAAGAAA AACGGGTAAC GGCGAGCGAA GCGGAGCAGG CTTTAAGCGA AGCCCTCAAA
TCTTCCGCAC CGCAAGAAGC AAAAGCAGCG CAAAAAGACG AGTAA
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| Protein sequence | MRDLVKQLKS EKHTAEFDAL RIKLASPEEV RSWSYGEVKK PETINYRTFK PEREGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE RMGHIELASP VAHIWYLKSL
PSRIGLLLDV TLRDIERILY FEAYVVVDPG MTDLEPRQLL SEEAYLDALE EYGDDFTALM
GAEAIQRLLR DIDVEAEVEA LRTELQTTTS ETKTKKLTKR LKVLSAFLES GNKPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLNAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAILGSN RRQLKSLADM IKGKSGRFRQ NLLGKRVDYS GRSVIVVGPT
LKLHQAGLPK KMALELFKPF IFSKLQLRGL ATTVKAAKKL VENEGPEVWD ILEEVIREHP
ILLNRAPTLH RLGIQAFEPV LVEGKAIQLH PLVCTAYNAD FDGDQMAVHV PLTLEAQLEA
RSLMMSTNNV LHPANGEPII VPSQDVVLGL YYITRDRVNA KGEGMRFADA QEVVRAYEND
QVDLHARITV RIKEGILNEA GEIEESDRLV NTAAGRILLW QIVPKGLPFA LVDQPMTKKA
VTKLLDFCYR NLGLKTTVIF ADKLMYMGFH YATHSGVSIG INDLVVPDQK EAIISRAEDE
VREIEKQYAS GLVTHGERRN KVIDIWSRTN DQVAKAMMEK IAVEKVKDAE GKEVAQSSFN
SIYMMSDSGA RGSAAQTRQL AGMRGLMARP DGTIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EHDCGTEASI EMMPHIEGGD VVEPLRERVL
GRILAEPVMD PKSRKELLAK DTFLDERRVD ILEEHSIDRV RVRSAITCEA RYGICSMCYG
RDLARGHVVN VGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRATAANNI GVKSTGKIKL
RNLKTVEQAQ GNLVAVSRSG ELVVQDLQGS EREHYKVPYG ATISVRDGDS VKAGQIVAQW
DPHTHPIITE VAGTLRFVDL VDGVTMNRQT DELTGLSSIV ITSTKQRSAS GKELRPMVKL
VDKNDDDLFL PGGKVPAHYF LPEGTFLTKE DGTTVNIGDV LARIPQETSK TRDITGGLPR
VADLFEARRP KDAAILAEIS GVVSFGKDTK DKGRLIITAP DGTTHEELIP KWRHVSVFEG
ETVEKGEVIA DGPRDPHDIL RLLGVNALAN YIVNEVQEVY RLQGVKINDK HIEVIVRQML
RKVKITQPGD TDLLQNEQVE RTRVREENEK IIKKDGTVAK VEPILLGITK ASLATESFIS
AASFQETTRV LTAASVAGKR DDLRGLKENV IVGRLIPAGT GFSYHQQRRA VAGKSVEEKE
IEEKRVTASE AEQALSEALK SSAPQEAKAA QKDE
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