| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1655 |
|---|
| Symbol | |
|---|
| ID | 5774720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 1514671 |
|---|
| End bp | 1515591 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 641317309 |
|---|
| Product | periplasmic solute binding protein |
|---|
| Protein accession | YP_001582989 |
|---|
| Protein GI | 161529163 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACAC AAACCAAACT TGCGATAATT GCAATTGCAG TAGTAATTCC ATTAAGTTCC
TTTGCAGTTT ATGGAATAAG TCCAAATACA GATTCAATAT ATTCTGAAAA GTCAAAATTA
CAAGTAATTT CATCATTTGA TCCGTTACAT GAATTTGTAC AAAATATAGG ACAAGACAAA
GTTGATGCAA TATTGCTTGT TCCAGTTGGA GTTGAACCTC ATGATTGGGA ACCAACAATC
AAAGATGTTC AAAAAATGCA AATATCTGAT ATGATAATTA TTAATGGAAT TGGTTTTGAA
GACTGGGTAG ATAAACTTGA TGAGAATAAC TATCAAGGAA ATATTGTTGA CACAAGTAAT
GGAATTTTAG TAAAAGAATA TGAAGAAGAT GAACATATGG ATGAACCTAA TCGTGAAACA
GGAGATCCTC ATATTTGGTT AAATCCAGTT TTTGCAAAAA TCCAAGTTCA AAATATTGCT
GATGAATTTT CAAAACATGA TCCAGAAAAT CAACAATATT ATCAATCTAA TGCAGAATCT
TACATTCAAG AACTAACTTT ATTGGATTTA CAAATTAGAA ATGATTTGTC TAATTGTAAT
TCCGATTTTA TTGCATTTCA TGATGCTTTT TCATATTTTG CAGATGAATA TGATTTACAT
CAACATACAA TTCTATCTTC AACTGATCCA CACGGAGAAG CAACTGCAAA AACATTAGAA
AATGTAATTT CAACAGCTAA AGAACATAAT ATTAAAATAA TTTTTAGTGA AGAAACAGTT
GACACTAGAA CTTCTGAAAC CATTGCACAT GAAATTGGTG GACAAGTTTT GGTCCTCTCT
CCATTAGAAA TTGCATCTGA AGGGACATAC ATTTCTAAAA TGAAACAAAA TCTTGAGAAT
CTACAGGAGG CCTTGTGTTG A
|
|---|
| Protein sequence | MNTQTKLAII AIAVVIPLSS FAVYGISPNT DSIYSEKSKL QVISSFDPLH EFVQNIGQDK
VDAILLVPVG VEPHDWEPTI KDVQKMQISD MIIINGIGFE DWVDKLDENN YQGNIVDTSN
GILVKEYEED EHMDEPNRET GDPHIWLNPV FAKIQVQNIA DEFSKHDPEN QQYYQSNAES
YIQELTLLDL QIRNDLSNCN SDFIAFHDAF SYFADEYDLH QHTILSSTDP HGEATAKTLE
NVISTAKEHN IKIIFSEETV DTRTSETIAH EIGGQVLVLS PLEIASEGTY ISKMKQNLEN
LQEALC
|
|---|
| |