| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1647 |
|---|
| Symbol | |
|---|
| ID | 5774743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 1504301 |
|---|
| End bp | 1505896 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641317301 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001582981 |
|---|
| Protein GI | 161529155 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGA AATTCGTAAA AAAGATCCAA ACAAGTGGAC ATAATTTGAA AAATCTATTC
CTGTTACTTT TACTGCCATT GTTGTTTGTA TTTACTTTTG ATAGTGCCTT TGGTCATGGT
GTAGGAAGTG AGACATTTCC TCCTGTAAAC CTTGATGGAA AACAAGTAAC TGTAGAGGTT
TCTTCATCAC AAAGTGATCC TGAAGCAGAT GACGATCAAC AAATCTCTAT TTCTCTGATT
GACTTTGATT CAAAAATTAC ACTACGTGAT GTTACATTTC ACATAAAATC TGAGAAAGGA
AACCAATTTC TCTTTGAGCA AGAATTCAAA ACAGATAATG GTTTTCTAGT ATTCAATTTT
GTTTCAGAAG AAACTGATTC TATTGTAATA GAAGAAGAAA CTGGTGCTAA TTTCTTTGGT
TCCATATTGG GATTAGATAG TAGACTAATT CATGTCAAAG GCCCAAAACT CAGTGAGGGT
GGACTGTACA AATTTGATAT CAGTATACTT ACTGCTGATG GATATTCAAA AACACTTGAA
AAACCACTAG TGTTTAATGC AGGAATTTCT ATTGCCCAAA CCTCTAGCCA TGATTTTGTT
GATCCAAACT TTGGAGAACA AAGCATTGAC GTAATTACTT ACTATGATGA AATATCTGAC
TTTGAATATG ATACTGATTC AAAAGAGATT AGATTTTCAA TGCCTTTTGA ATGGAGTCAT
ACAAACATCA ATCAAACATC AGTTGTCCAT GAAGAGTTAG ATATTCCAAA AACCTATGGT
GATTTGCTTG TATCTGGATT CACCATGTAC ATTAATGGAG TAGAACTCTC TGATGACATA
TCTACAATAG ATGACTTTTT TTCTGACGGT CGTGTGGTGC ATTTTATTAT TTATCAACAA
GAATTACTCC GAGTTCTTGA AAATGGCTCA AATGAAAATG GCATGAATTT CCTAATTACT
CCTGATAGAG ATTATCCGCA TATGAGCTCA GTTACTGAAA ATGGACAATT TCGAATTTTT
GCATCTTGGG AACCTGAAAA CTTGCAATCT GGTTCTGATG CAAAAATATT ATTTGATGTA
ACTGATGTTT TCTTGAAAAA CAAACCTATA GCAACAAATT ATGATTTCTC TATTACACAA
AATAACAAAG TCATTTACCA ACAAAGTGGA ACAAGTACTG ATTCAAGAGA AGAACATAAT
GTAGTAGAGT TTACAATTCC ACAAGATGTT ACAGGAATTG TTAATCTAAA TTTTAATAAT
TTAGATAATA ATGATCTTGC AAGAACAACT ATTCCAATTG TAATTGATAG AGTTACATCT
CAAAAAGAAA TTACAATTCC TGATTGGATT AGAAACAATG CATTGTGGTG GTCTGAAGAA
CAAATTGATG ATAATACATT TGTTCAAGGA ATTGAATATC TCATCAAAAA CAAAATAATT
GTAATTCCAT CAACACAACA ACAAGATTCT TCATCCCAAG AAATTCCATC ATGGATTAGA
AACAATGCTG CATGGTGGGC TGCAAAACAA ATAGACGATC AGACATTTGT CCAAGGACTG
GAATATTTGA TTCAAAAGGG AATCATTCGT GTCTGA
|
|---|
| Protein sequence | MEKKFVKKIQ TSGHNLKNLF LLLLLPLLFV FTFDSAFGHG VGSETFPPVN LDGKQVTVEV
SSSQSDPEAD DDQQISISLI DFDSKITLRD VTFHIKSEKG NQFLFEQEFK TDNGFLVFNF
VSEETDSIVI EEETGANFFG SILGLDSRLI HVKGPKLSEG GLYKFDISIL TADGYSKTLE
KPLVFNAGIS IAQTSSHDFV DPNFGEQSID VITYYDEISD FEYDTDSKEI RFSMPFEWSH
TNINQTSVVH EELDIPKTYG DLLVSGFTMY INGVELSDDI STIDDFFSDG RVVHFIIYQQ
ELLRVLENGS NENGMNFLIT PDRDYPHMSS VTENGQFRIF ASWEPENLQS GSDAKILFDV
TDVFLKNKPI ATNYDFSITQ NNKVIYQQSG TSTDSREEHN VVEFTIPQDV TGIVNLNFNN
LDNNDLARTT IPIVIDRVTS QKEITIPDWI RNNALWWSEE QIDDNTFVQG IEYLIKNKII
VIPSTQQQDS SSQEIPSWIR NNAAWWAAKQ IDDQTFVQGL EYLIQKGIIR V
|
|---|
| |