| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1627 |
|---|
| Symbol | |
|---|
| ID | 5773325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 1481570 |
|---|
| End bp | 1484224 |
|---|
| Gene Length | 2655 bp |
|---|
| Protein Length | 884 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641317281 |
|---|
| Product | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| Protein accession | YP_001582961 |
|---|
| Protein GI | 161529135 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit
[COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATT CACAAATAGA AAATACTATC AATGAGATCC GTAAGCGCAG TGGCGCAGTA
ACGGCTTTCA ATAAGGATAA AATTTCAAAT GCCATTTACA AGGCATTGGC TGCCACCTCT
AAAGCCGACC GTGGTCTAGC CGATCAGTTA GCAGATAATG TTGTTAACAA GTTAGTAGAG
CAAGGCTTCA CTAGTACGAG AAGCCCTACT GTTGAAGATA TTCAAGATAT TGTAGAGTCT
ACTTTGATTG ACAGTGGCAA TAGCGATATT GCAAAAGCCT ACATTGTTTA CAGACATGAG
AGAAGAAAAC TAAGAGACGA GAAAATGAAG GTCCTGAATC TAAAGGCCCT TGATCCAGTC
TCCAAAAAGT TTGATTTGAA TTGTCTTAGA GTTTTAGCAT CAAGATACCT TTTCAGAAAT
GGAAAGAATG AGATTATTGA ATCTCCAACT CAAATGTTTG AGAGAGTCGC AATACTTGTC
GGAATTGGTG ATCTCATGTA TGACGCCCAA GTCTTTGACA AATCTGGAAA TACAAAACAA
GATGTAGAAG AAGCAAAGTC TTATCTTGAA AAACTAGATG CCTTTGATTA CAAATTCAAA
GTTGGAGACT ATTTCTTCAA CAAATGGCAT TTCAGATCAC TCATCAACCA CTACGTAACA
CTTGCAAACA AAGGTCACAT GAAGATAAGC TTCAAAGAAC TTTTGACACT ACTTGCAGCA
AAGAAACTAG ATGGCTATGC TGATAAAATC ACAGAGTACT TTGATCTGAT GGTTTCTCAA
GACTTTTTGC CAAACTCTCC AACAATGATG AATGCAGGTG GCAGACTAGG TCAACTCTCT
GCATGCTTTG TACTTGGAAT GCAAGATGGC ATGGAAGAAA TCATGAAATC AACTTCTGAT
GCAGCATTAA TCTTCAAATC TGGTGGTGGA GTTGGAATCA ACTATTCTGA TCTTCGTGAA
GAAGGTGACA TTGTAGCATC AACATCAGGT GTTGCATCCG GTCCGGTTTC CTTCATGAAC
ATCATTAACA CTGTAACTGA AGTTGTTAAA CAAGGAGGAA AGAGACGTGG TGCAAACATG
GGTATAATTG AAGCATGGCA TCCAGATGTT GAAAAATTCA TCACAAACAA AACAGAACCT
GGTGTTTTAG AAAACTTTAA CGTCAGCGTT GGTGTTTGGG AAGACTTTTG GCATGCACTT
GTAAACACTA GTGATGGTAA CTATGTTTTA CGTAGTCCAC GTGACAAAAA ACCAGTTAAA
GAAATTAACG CACACCAACT AATTGACTTG ATTGCATTAT CTGCATGGAA GAGTGCAGAA
CCTGGTTTGA TCTTCTTTGA TCAAATTAAC AAATACAATG TATTTGCAAA AGCAAGACAA
GCACCATTAC GTGCAACAAA TCCATGTGGT GAACAAAGTC TTTACCCATA CGAATCATGC
AATCTTGGTT CTATCAATTT AGTAAATCTC GTAAAGAGAC AAGCAGATGG AACCTATGAA
TTTGATTGGC AAAGATATGA AGAAACAATC AGAAAGACTA CAAGATTCCT TGATAACATC
ATTGATGTTA ATCACTATCC AGTTCCAGAG ATCAATGTAG CATCAAAGGA ATCCCGAAGA
ATTGGATTAG GTGTAATGGG AGTAGCAGAT CTCTTGTACA AACTAAGAAT CCCATACAAC
TCTAAAGAGG GATATGAATT ACAATCCAAA CTATCTGAAG CCTTAACATA CTATTCCATG
GAAGAAAGTG TAGCCCTTGC CAAGTCTCGT GGTGAATTCC CACTGTGCTC CAAGACGGAA
TATCCTGAAG GAAAGATTCC TGTTGCAGGC TATTATGAAA AGCCAAAAGA ATCTCACTCT
TATGAATGGG ATGCACTAGT TGAGAAAATC AAACAATATG GAATTAGAAA TGTCCTAACA
ACAACAGTAG CTCCAACAGG TACTTTGTCA ATGATTGCAG ATTGTTCAAA CGGAATGGAA
CCTGCATTTG CATTGGTATT TGAGAAGAGA GTTACTGTAG GAAGATTCTT CTATACAAAC
AAGATTGTTG AACAAGTCCT AAAAGAAAAT AACCTATACA ACGATGAAAT CCTTGCAAAA
ATTGCAGACA ACTATGGTTC ATTGAAAGGA ATTGATGAAA TTCCTCAATG GATGCAAGAT
GTCTTTGTAA CCGCAATGGA CATTCACTGG TCTGATCACT TGATGGCTCA AGGTGTATGG
CAAGACTGGA TTGGAAATGC AATTGCAAAA ACAATCAACA TGCCATATGA TGTAACTGCA
GAAGATGTAA AATCTGCATA TCTGTTGGCA CATGAGATTG GTCTAAAAGG TATCACAGTG
TACCGTGATG GCTCTAGACA CAAACAAGTT CTTCATATGA CAAGTGAAAA TGCAGAAAAA
ACATTTGATG TTACACCAAG TGAACATGTA ACAAACTATG TTTCAACACA AATCACAAAC
CCATACATCA AATCACAAGT TAATGCAGCA CTTGCATTAA AGGTACATGA CGAAGAAATC
AAATCTGAAC CAATTCAACA ACAAGAAGAA GTTGCAGAAG ATCGTCTATG TCCAACATGT
AAGAACAACC TTGTATTTGT AGAAGGTTGC AGTATCTGCA TTGAATGTGG ATTTAGTGGT
TGTACTTCTG GATAG
|
|---|
| Protein sequence | MDNSQIENTI NEIRKRSGAV TAFNKDKISN AIYKALAATS KADRGLADQL ADNVVNKLVE
QGFTSTRSPT VEDIQDIVES TLIDSGNSDI AKAYIVYRHE RRKLRDEKMK VLNLKALDPV
SKKFDLNCLR VLASRYLFRN GKNEIIESPT QMFERVAILV GIGDLMYDAQ VFDKSGNTKQ
DVEEAKSYLE KLDAFDYKFK VGDYFFNKWH FRSLINHYVT LANKGHMKIS FKELLTLLAA
KKLDGYADKI TEYFDLMVSQ DFLPNSPTMM NAGGRLGQLS ACFVLGMQDG MEEIMKSTSD
AALIFKSGGG VGINYSDLRE EGDIVASTSG VASGPVSFMN IINTVTEVVK QGGKRRGANM
GIIEAWHPDV EKFITNKTEP GVLENFNVSV GVWEDFWHAL VNTSDGNYVL RSPRDKKPVK
EINAHQLIDL IALSAWKSAE PGLIFFDQIN KYNVFAKARQ APLRATNPCG EQSLYPYESC
NLGSINLVNL VKRQADGTYE FDWQRYEETI RKTTRFLDNI IDVNHYPVPE INVASKESRR
IGLGVMGVAD LLYKLRIPYN SKEGYELQSK LSEALTYYSM EESVALAKSR GEFPLCSKTE
YPEGKIPVAG YYEKPKESHS YEWDALVEKI KQYGIRNVLT TTVAPTGTLS MIADCSNGME
PAFALVFEKR VTVGRFFYTN KIVEQVLKEN NLYNDEILAK IADNYGSLKG IDEIPQWMQD
VFVTAMDIHW SDHLMAQGVW QDWIGNAIAK TINMPYDVTA EDVKSAYLLA HEIGLKGITV
YRDGSRHKQV LHMTSENAEK TFDVTPSEHV TNYVSTQITN PYIKSQVNAA LALKVHDEEI
KSEPIQQQEE VAEDRLCPTC KNNLVFVEGC SICIECGFSG CTSG
|
|---|
| |