| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1566 |
|---|
| Symbol | |
|---|
| ID | 5773085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1434547 |
|---|
| End bp | 1435098 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641317219 |
|---|
| Product | RNA-binding protein |
|---|
| Protein accession | YP_001582900 |
|---|
| Protein GI | 161529074 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1096] Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAA ATGCAACATA TCCAGGTGAA AAAATAGCAT CTATTGAAGA ATATGAGGCA
GGATACAATG CTTTTGATGA TGGAGATATG GTCAGAGCAG CAACTATTGG CCAAAAAGAC
ATCGATAAAA CCACCAGAAC TGCAAATATC AATCATCCAA AGAATCTATC CATACCAAAA
GTAGGAGATG TTGTAATTGG AACAGTTGCA GCAGTAATGT CATCTATGAT TGCAGTTTCA
ATTGATTACA TTAATGGAAA TCCAACTACA TCTAAAGTTG AATGTGTATG TTCTACAAGA
AACATTAGAA AAAGAAATAT CGCACTAGTA AACGATATAG CAAAATTAAA AATTTTAAAT
CATCTTAATG GTACGATTCA TGCAACAATA GATGAGTCAA GTTTAGGGAT ACTATTTACA
AAATGTCGCA AATGTGGTGG AAAAGTAGTA CCTATGCGTG ATGCTATAAA ATGTACAGAG
TGTTCATGGA TTGATGAAAG AAAACTATCT GCAGACTTTG GTAAAAGCGA TTTCGTAAAA
CTGAGAGAAT AA
|
|---|
| Protein sequence | MSENATYPGE KIASIEEYEA GYNAFDDGDM VRAATIGQKD IDKTTRTANI NHPKNLSIPK
VGDVVIGTVA AVMSSMIAVS IDYINGNPTT SKVECVCSTR NIRKRNIALV NDIAKLKILN
HLNGTIHATI DESSLGILFT KCRKCGGKVV PMRDAIKCTE CSWIDERKLS ADFGKSDFVK
LRE
|
|---|
| |