| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1514 |
|---|
| Symbol | |
|---|
| ID | 5773394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1376438 |
|---|
| End bp | 1377895 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641317165 |
|---|
| Product | geranylgeranyl reductase |
|---|
| Protein accession | YP_001582848 |
|---|
| Protein GI | 161529022 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00785047 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCAGATT ATGATGTTAT AATTGCAGGT GGAGGACTTG CAGGAACAAT TACAGCTCAA
GCTATTTCTC ATTACACAAA TCAAAACGCA AAGATCTTGG TAGTTGACAG AAACTCTGCA
ATGCTACCAG GTAGAAAGTC ATTGTCTGGT TGGGTCTGCG GAGACGCATG CTCCAAAGAA
GCAGTGGATT TCATGACAGA AAGAATCAAG GTGGAATGGA CCAGACCAGA AATCGAACAT
GACGTAAAAG GTGTCATGGC ATTTTCTCCA GACAAAGAAA CTGCAATTCC ATTTGATGGT
GCAGGTTACA TGTTGAATCG TCAAAAACTA CCAGAGATTC AAAATGAAAG ATGTCAAAAG
ATGGGAATCG ATTTTGAATT TGAAAAAAAT CTTTCAGGTC TAATTTACGA AGGTCAACAA
GTTGTCGGTG TCCAGGGAAC AGATGCCAAA ACAAGTGAGC CATTCAAAAA GACAGCAAAG
CTTGTCATTG ATGCTACAGG TGTTGCATCC ATGCTCAGAA ATGGACTAAA GAACTCTACC
AAAGTAGAAA AAAGAATCGA CAGACGAGAC TTGGAATCAA CTGGCAGATA CATCATGTAT
TTTGAGCCAG GACAAAAAGA ACTTTCAGAG TTTGATCCAG ATTATTGTAT TATTCACTTA
GACCAAGATA TTGCTCCAGG TGGATATGGA TGGGTATTTC CAAAAGCAGA CAACAAAGTA
AACATTGGTC TTGGAGTTGA AAAATCACTT TTAGAAAGAA GAAACAAAAG ATTAGGCAAA
AAAGACAATG TCGAATCTCT AATGAAAGAA TATTTGGAAA GAAATACTGT AATTAAAAAT
CCAACACTAT CACAAGATCC TGAAGACATT AACAACAACA CAGGAATATT CCAAGTTTCA
GTTAGAAGAC AAAATGATTG TATGGTTTCA GCTGGTTACA TGATGGTTGG AGATTCTGCA
TGGATGCCAA AACCAATTGA TGCAGGGGGA ATCGGTCCGG CACTAATTGC AGGAACTATT
CTTGGAAACA ATGTTGCACA AGCATTAGAA GCAAATGATG TTTCAGAAGC TGGCTTGTGG
CAATACAATT TAGATTTCAT CAAAGAGTAC GGTTACAAGA CTGCAGGTCT TGAATTGTTT
AGAAGACTAG TTCAACAAAT GACAAACGAG CAAATCAGTT ACGGTATGAA ACACTTTTTG
GGAAACATGG ATGTAGAGTC GATCAGCAAA GGTGAACATC CAGACTTTTC AGGACTAGGA
AAACTTGGAA TGATAATTAG AGGTGCAATG AACAAAACAG TTGCAGATGG TTTGAGATAC
ACATCAAAAG AAAATCAATG GTTAGTAGAA CATTACAATA ATTATCCAAA AGACCCATCT
GGTTTTGATG AGTGGAACAA AACACTTCAT GGAAGAATGG ATGCAGCTTT TGCAAAAGTA
GAAGCATTTG GAAAATAG
|
|---|
| Protein sequence | MADYDVIIAG GGLAGTITAQ AISHYTNQNA KILVVDRNSA MLPGRKSLSG WVCGDACSKE
AVDFMTERIK VEWTRPEIEH DVKGVMAFSP DKETAIPFDG AGYMLNRQKL PEIQNERCQK
MGIDFEFEKN LSGLIYEGQQ VVGVQGTDAK TSEPFKKTAK LVIDATGVAS MLRNGLKNST
KVEKRIDRRD LESTGRYIMY FEPGQKELSE FDPDYCIIHL DQDIAPGGYG WVFPKADNKV
NIGLGVEKSL LERRNKRLGK KDNVESLMKE YLERNTVIKN PTLSQDPEDI NNNTGIFQVS
VRRQNDCMVS AGYMMVGDSA WMPKPIDAGG IGPALIAGTI LGNNVAQALE ANDVSEAGLW
QYNLDFIKEY GYKTAGLELF RRLVQQMTNE QISYGMKHFL GNMDVESISK GEHPDFSGLG
KLGMIIRGAM NKTVADGLRY TSKENQWLVE HYNNYPKDPS GFDEWNKTLH GRMDAAFAKV
EAFGK
|
|---|
| |