Gene Nmar_1512 details

Gene Information

• Locus tag: Nmar_1512
• ID: 5773106
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 1375184
• End bp: 1375795
• Gene Length: 612 bp
• Protein Length: 203 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 641317163
• Product: 30S ribosomal protein S3Ae
• Protein accession: YP_001582846
• Protein GI: 161529020
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1890] Ribosomal protein S3AE

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.00595685
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

TTGGCACGTA GAAAAGGTAG AGTAAAGGAC AAGTGGCGTG AAAAACGCTG GGTTACTGTA 
AATGCTCCAG ATTCATTTAA CAATGTACCA ATTGGATATG TTCCAATTAC AGATGATGAG 
AATGCAGCTG GCAGAGTTTT AGAAGTTACA CTTTACGATA TCCTAAAAGG AGATCCTTCA 
CAACACCAAT ACAAGATCTA TTTCCAAATT AACAAAGTTG ATGGAGACAA TGCATCAACA 
ATCTTCAAGA GATTCGAATA TTCAAAAGAA TTTTTGCGCA GTCTTGTTAG ACGTGGTTCA 
TCAAAGATTA ATTTCATTAT TGATGTAAAA ACAAAAGATG GTTACATCTT TAGAATCAAA 
GTAATTGCAT TAACTCACAG ACAACTCAAC ACATCTAGAA AACATGCACT TAGATTAATT 
GCAAGAGATG TTATCAACAA ACAAGTTCCA GACATGACAA TTGAGCAATT TGTTCAAGCA 
ACATGTTACA GTAAAATCAA TTCAGACATT ATGGCTGCAT TCAAAAAAGT CATCAGAGTA 
AGACATGTTG GTCTTGAAAA AGTCAAACTC ATCAGAACTG CTGAGAAAGA AACAGTTTTG 
CTTGAAGCAT AA 

 

Protein sequence

MARRKGRVKD KWREKRWVTV NAPDSFNNVP IGYVPITDDE NAAGRVLEVT LYDILKGDPS 
QHQYKIYFQI NKVDGDNAST IFKRFEYSKE FLRSLVRRGS SKINFIIDVK TKDGYIFRIK 
VIALTHRQLN TSRKHALRLI ARDVINKQVP DMTIEQFVQA TCYSKINSDI MAAFKKVIRV 
RHVGLEKVKL IRTAEKETVL LEA