| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1511 |
|---|
| Symbol | |
|---|
| ID | 5773574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1373878 |
|---|
| End bp | 1375143 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641317162 |
|---|
| Product | seryl-tRNA synthetase |
|---|
| Protein accession | YP_001582845 |
|---|
| Protein GI | 161529019 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0172] Seryl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0147208 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGACC CAAAACTACT CAAAGAAAAA CCACAGGTGA TCAGAGACAT GCTCAAGGCA
AGAGCAGTAG ATTTTGATTT GGATGGATTG ATAGAGTCTG ACCAAAAAAG ACGAGAGTTT
ATCATAAAAA CTGACGAGTT CAAAAAGAGA AGAAATGAGA TTGGAAATGA AATCGCTCAA
AAGAAAAAGG CAGGAGAAGA CACATCGACA ATTCTAGATG AGATGAAAAA TGTCTCAGCA
GAACTTGCAA AACTAGAATC ACAACAAGAA GAGATTGAAA GTAAATATGC AAAATTAGCA
TTTACAGTTC CAAACTTGGT TCACGAATCA GTTCCAGTAG GACCTGATGA TACTGCAAAC
AAAGAGATGA GAAAGTGGGG AGAGATTCCA CAGTTTGATT TTAAGATAAA TGATCACATT
GACATGTCTG AGAATTTGGA TTTGGTAGAT TTAGAGAGAG CAGCCAAAGT TGCAGGTGCC
AGATTCTATT ATCTCAAAAA TGATTTGGTA AGACTAAACC AATCACTAAT TCACTTTGCA
TTAGACTTTT TAGCAGAAAA AGAGTATTCG CTAGTACAAC CGCCATACAT GATTAATCGC
TCATCAATGG AAGGCGCAGT AATTGCAGAT GACTTTGAGG AAGTAATCTA CAAAGTTGAA
GAAGAGGATC TCTACATGAT TGGTACATCA GAGCATGCAA TGGCAGCAAT GCACTCTAAA
GAGATTATTG AAGGAAAAGA TCTTCCAATA AGATATGCCG GAGTAAGTCC ATGTTTTAGA
AAAGAAGCAG GAGCACATGG CAGAGACCAG AAAGGAATCT TTAGAGTCCA CCAGTTTGAC
AAGATTGAAC AGTTTGTCTA TGCAAGACCT GAAGACTCTT GGAAAGAACA TGAAAAGATG
TTGGCAGTAG CTGAAGAGTT TTACCAGAAA CTAGAGATTC CACACAGAGT CATGTTATTG
TCAACTGGAG ACATGGGAAA GATTTCTGCC AAGACATACG ATATTGAAGC ATGGATGGCA
GGACAAAATT CCTATAGGGA AATAGTATCG TGTTCAAACT GCCTTGATTA CCAAGCAAGG
AGACTCAAAA TCAGATTCAG AGACAAGACA AATGAAGACA CACAGTACAT CCACACATTA
AACAGCACAC TGGTAGCCAC AACCAGAGTA CTGGTATCAA TTATGGAGAA TTTCCAGACA
AAGGATGGCC ATATCAAAAT TCCTCAAGTT TTACAGAGTT ACATGGGAAA TCAGAAAGAG
ATCTAG
|
|---|
| Protein sequence | MLDPKLLKEK PQVIRDMLKA RAVDFDLDGL IESDQKRREF IIKTDEFKKR RNEIGNEIAQ
KKKAGEDTST ILDEMKNVSA ELAKLESQQE EIESKYAKLA FTVPNLVHES VPVGPDDTAN
KEMRKWGEIP QFDFKINDHI DMSENLDLVD LERAAKVAGA RFYYLKNDLV RLNQSLIHFA
LDFLAEKEYS LVQPPYMINR SSMEGAVIAD DFEEVIYKVE EEDLYMIGTS EHAMAAMHSK
EIIEGKDLPI RYAGVSPCFR KEAGAHGRDQ KGIFRVHQFD KIEQFVYARP EDSWKEHEKM
LAVAEEFYQK LEIPHRVMLL STGDMGKISA KTYDIEAWMA GQNSYREIVS CSNCLDYQAR
RLKIRFRDKT NEDTQYIHTL NSTLVATTRV LVSIMENFQT KDGHIKIPQV LQSYMGNQKE
I
|
|---|
| |