| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1477 |
|---|
| Symbol | valS |
|---|
| ID | 5774489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 1345206 |
|---|
| End bp | 1347521 |
|---|
| Gene Length | 2316 bp |
|---|
| Protein Length | 771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641317125 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_001582811 |
|---|
| Protein GI | 161528985 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCCAA AAATTACAGA GAAAGCTTGG AATCCAGAGT TAGAGGCACA GGTCTTAAAG
AAATGGCAGG ATTCAGACCT TTACAAATTC ACTCCAACTG ATGATAATTA CACCATAGAT
ACGCCTCCAC CATACCCATC AGGCAGGCCA TGGCACATTG GAGCTGCTGC TCACTATTCT
CAGATAGACA TGATTGCAAG AACTGCTCGC ATGAATGGCA AGAACGTCTA CTTTCCAATT
GGAATTGACA GAAATGGTTT GCCTGTAGAG TTCTACACTG AGAAAAAACA CAACATCAGA
ATGAGGGAAA CTGACAGAGG AGAATTCTTG GATTTGTGCC GAGAAGCACT AGATGACTTG
GAAGAAGAGA TGGTGTTGAT TATGACAAAC CTTGGTTTGA GTGGTGACTT GAAGAATCAT
TACAGAACAG ATTCAGAAGA ATATCGTGCA TTAACACAAT CAACATTCAT CAAACTATGG
AAAGAAGGAA AGATTGTTCT AGCTACTCGA CCTAACAACT ATGATTGGGT ATCTGGCACT
ACAATTGCTG ATGCTGAAAT TGCATACCAA GATTTGATGA CAAAGCTAGT TCACATGAAA
TTCAAGATTA AAGATATGGA TAAGGAAATC ATCATTGCAA GTACAAGACC AGAACTACTA
TGTGCATGTC GTACCATTAT TGTAAACCCT GAAGATGAAA GATATGCTCC ATTTGTTGGA
AGTAAAGTAG TTGTACCAAT TACAGGGGCG GAAGTTGAAA TCAAGACTCA CCATTCAGCT
CAGCAAGACT TTGGTTCAGG AGCTGTAATG GTTTGTAGTT ATGGTGATCA AAATGACGTT
GCATTGTTTA GAGAGATGGG ACTAGAAGAG ATTGTTGCAA TTGGTTTGGA TGGAAGGATG
ACTGAAGCTG CAGGAGAATA TGCAGGACTC AAACCAAAAC AAGCTAGAGA AAAAATTATT
GCAGATTTAG AATCAAAAGG ATTTGTAGAA AAAATCGAAG AGATTAATCA TAGAACACCA
ATTTCAGAGC GAAGTAAGAT TCCAATTGAG ATTATACCCA TGGAGGAGTA CTATCTCAAA
CAGAAAGATT CCATTGAAAA AATGCGAAAA TTAGGCTCAG AAATCACGTT TTACCCCTCT
ATGCACAAGC AGATTTTGAT GAATTGGCTT GATTCCATAT CCATTGACTG GCCAATCTCA
AGACGAAGAT ACTATGGAAC AGAGATTCCA ATTTGGTATT GTTCTAGTTG TAATGAACCG
CACGTCCCTG AACCAGGAAA GTACTATCAA CCATGGAAGG AGAAGTGTCC AATTGAAAAG
TGTACAAAGT GCGGTAATGG TGAATTTACT GGGGAGGATA GAACATTTGA TACATGGATG
GATTCTAGTG TATCGCCATT GTTTGTTACA AAGTATGATA AGGATTCAGA ATTCTTTGAG
AAAACTTATC CAACATCACT TAGACCTCAA GCAAAAGATA TTGTAAGGAC TTGGTTGTAT
TACACACTTT TGCGTTGTGA TATGTTAACT GGTAAAAAAC CATGGACTGA AGCTTGGATT
ATGGGTTATG GTTTAGATGA GAAAGGAATG AAGATGAGTA AAAGTAAAGG AAATGCAATT
GATCCATTAC CAGTAATAGA GAAATTTGGA GCTGACACAT TTCGATTCTG GAGTGCAAGT
GAGATTAATC ATGGTTATGA CTTTAGATGC AATGAGCAAA AGATAGAGTC TACAAAGAAA
TTCTTGAGCA AACTATGGAA TGTCTCAAGA TTCTTGTCAA GCTTTCCTGT AATCAAAGAA
GGAAAACCAA CTACCGTTGA CAAGTGGATT TTGTCTGAAT TGAACAATTT GATTAAAGAT
TGCAAGAAAG GATATGATGA ATACAACTTC TTTGTTCCAG CAATTGCAAT CAGGGAATTT
ACTTGGAATT TGTTTGCAGC TCATTACATC GAAATGGTCA AAAAACGAGC CTACGGAGAA
GGATTTTCTG AAGAGGAACG AGATGCAGCC ATTTACACAC TACACAAAGT ACTCTCCACA
GTCTTGAAAT TATTGGCACC AATTACACCA TTTATCACAG AGCATTTGTG GCAGACACTA
TACTCTGAGA CTAGTATTCA TACTGAAAGA CAAGCTGAAT CTGAAAAGGT AGAAGATTAT
TCCAAAACCA CTGAAGAAGT TGTACAGTTT AACTCTAAAG TATGGAATGA GAAAAAGGCA
AAAGAATTGT CATTAAAGGA CTCTATTGCA GTTGAAGTTC CTGAAAGTTT GTCAGAGTTT
AAGAAAGATT TGCAATCAAT GCACAATCTT GAGTGA
|
|---|
| Protein sequence | MDPKITEKAW NPELEAQVLK KWQDSDLYKF TPTDDNYTID TPPPYPSGRP WHIGAAAHYS
QIDMIARTAR MNGKNVYFPI GIDRNGLPVE FYTEKKHNIR MRETDRGEFL DLCREALDDL
EEEMVLIMTN LGLSGDLKNH YRTDSEEYRA LTQSTFIKLW KEGKIVLATR PNNYDWVSGT
TIADAEIAYQ DLMTKLVHMK FKIKDMDKEI IIASTRPELL CACRTIIVNP EDERYAPFVG
SKVVVPITGA EVEIKTHHSA QQDFGSGAVM VCSYGDQNDV ALFREMGLEE IVAIGLDGRM
TEAAGEYAGL KPKQAREKII ADLESKGFVE KIEEINHRTP ISERSKIPIE IIPMEEYYLK
QKDSIEKMRK LGSEITFYPS MHKQILMNWL DSISIDWPIS RRRYYGTEIP IWYCSSCNEP
HVPEPGKYYQ PWKEKCPIEK CTKCGNGEFT GEDRTFDTWM DSSVSPLFVT KYDKDSEFFE
KTYPTSLRPQ AKDIVRTWLY YTLLRCDMLT GKKPWTEAWI MGYGLDEKGM KMSKSKGNAI
DPLPVIEKFG ADTFRFWSAS EINHGYDFRC NEQKIESTKK FLSKLWNVSR FLSSFPVIKE
GKPTTVDKWI LSELNNLIKD CKKGYDEYNF FVPAIAIREF TWNLFAAHYI EMVKKRAYGE
GFSEEERDAA IYTLHKVLST VLKLLAPITP FITEHLWQTL YSETSIHTER QAESEKVEDY
SKTTEEVVQF NSKVWNEKKA KELSLKDSIA VEVPESLSEF KKDLQSMHNL E
|
|---|
| |