Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nmar_1393 |
Symbol | |
ID | 5773035 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosopumilus maritimus SCM1 |
Kingdom | Archaea |
Replicon accession | NC_010085 |
Strand | - |
Start bp | 1275902 |
End bp | 1276519 |
Gene Length | 618 bp |
Protein Length | 205 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 641317039 |
Product | ribonuclease HII |
Protein accession | YP_001582727 |
Protein GI | 161528901 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0164] Ribonuclease HII |
TIGRFAM ID | [TIGR00729] ribonuclease H, mammalian HI/archaeal HII subfamily |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCAAATTT GTGGAGTTGA TGATGCAGGA CGTGGTTCTA TGCTTGGTCC ACTAGTAATT TCTGGAATTT CTATTAATAA AAAAAACTTG AGAAAACTTT CTTCATTAGG AGTAAAGGAT TCAAAGAAAC TTTCTCCAAA AAGCAGAGAG CTACTTTACA AACAAATTAT TGAATTAGTT GATGATTATT ACATTGCAAA AATTACCCCA AGATCTATTG ATGCAAGTGT GAAAAAACAC GGTTTGAATG AACTTGAAGC AAAATACATG GCAAAAGTTG TTTTAAAACT AGATCCTGAT ACATCCTATG TTGATTCTTG TGATGTAAAT CCTAAAAGAT TTGGAAAAGA AATATCAAAA CTATCTGATA ATCATAAAAT CAAATCCTAT CATCATGCAG ATAGTCGATT TGTAGTAGTT TCTGCAGCCT CAATTATTGC TAAAGTTACG CGTGATAGGG CAATTGAAAA ACTACGAAAA ACCTATGATC TTGGAAGTGG GTATCCTTCT GACTCTAAAA CGGTCAAATT TGTGACTAGA TACTACAAAA CCAGCAAATC TCTCCCTACA TTTGTACGCA AGAGCTGGAA ACCTGTTCAA AAAATTCTAA ATGGCTAA
|
Protein sequence | MQICGVDDAG RGSMLGPLVI SGISINKKNL RKLSSLGVKD SKKLSPKSRE LLYKQIIELV DDYYIAKITP RSIDASVKKH GLNELEAKYM AKVVLKLDPD TSYVDSCDVN PKRFGKEISK LSDNHKIKSY HHADSRFVVV SAASIIAKVT RDRAIEKLRK TYDLGSGYPS DSKTVKFVTR YYKTSKSLPT FVRKSWKPVQ KILNG
|
| |