Gene Nmar_1393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_1393 
Symbol 
ID5773035 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp1275902 
End bp1276519 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content33% 
IMG OID641317039 
Productribonuclease HII 
Protein accessionYP_001582727 
Protein GI161528901 
COG category[L] Replication, recombination and repair 
COG ID[COG0164] Ribonuclease HII 
TIGRFAM ID[TIGR00729] ribonuclease H, mammalian HI/archaeal HII subfamily 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAAATTT GTGGAGTTGA TGATGCAGGA CGTGGTTCTA TGCTTGGTCC ACTAGTAATT 
TCTGGAATTT CTATTAATAA AAAAAACTTG AGAAAACTTT CTTCATTAGG AGTAAAGGAT
TCAAAGAAAC TTTCTCCAAA AAGCAGAGAG CTACTTTACA AACAAATTAT TGAATTAGTT
GATGATTATT ACATTGCAAA AATTACCCCA AGATCTATTG ATGCAAGTGT GAAAAAACAC
GGTTTGAATG AACTTGAAGC AAAATACATG GCAAAAGTTG TTTTAAAACT AGATCCTGAT
ACATCCTATG TTGATTCTTG TGATGTAAAT CCTAAAAGAT TTGGAAAAGA AATATCAAAA
CTATCTGATA ATCATAAAAT CAAATCCTAT CATCATGCAG ATAGTCGATT TGTAGTAGTT
TCTGCAGCCT CAATTATTGC TAAAGTTACG CGTGATAGGG CAATTGAAAA ACTACGAAAA
ACCTATGATC TTGGAAGTGG GTATCCTTCT GACTCTAAAA CGGTCAAATT TGTGACTAGA
TACTACAAAA CCAGCAAATC TCTCCCTACA TTTGTACGCA AGAGCTGGAA ACCTGTTCAA
AAAATTCTAA ATGGCTAA
 
Protein sequence
MQICGVDDAG RGSMLGPLVI SGISINKKNL RKLSSLGVKD SKKLSPKSRE LLYKQIIELV 
DDYYIAKITP RSIDASVKKH GLNELEAKYM AKVVLKLDPD TSYVDSCDVN PKRFGKEISK
LSDNHKIKSY HHADSRFVVV SAASIIAKVT RDRAIEKLRK TYDLGSGYPS DSKTVKFVTR
YYKTSKSLPT FVRKSWKPVQ KILNG