Gene Nmar_1360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_1360 
Symbol 
ID5773497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp1246835 
End bp1247611 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content42% 
IMG OID641317005 
Producthypothetical protein 
Protein accessionYP_001582694 
Protein GI161528868 
COG category[S] Function unknown 
COG ID[COG2968] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.412374 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAAA AACAACTAAC AGTTGTAATG CTTTCTGTAT TGGTAGTTGC AGTGTCTGCA 
ACTGCCGTAT CATCAGAGGC AGATGCACAA AAGCCAACAT CAATGCTATC TTTTGAAAAA
ACCATTGACG TTGTAGGAAT AGGAATGATT TCCACAGATC CTGATCTTCT AACAATTCGA
TTGGGACTGG AGACCAAAGG CGATACTGCA AATGATGCAC TGACTGCAAA TTCTGCCCAG
ATGAGCAAAA TACTACAGGC CTTAAAGAGC GTGGGCATTT CTGAATCAGA AATCAGCACG
TCATCACTAA ACATTCGTCC ACAGTACGAA TACGTTTACG ATGAAACACG TGACAGAGAC
ACAAGAACGC TTGTAGGATA CGAGGCATCC AACATCGTCA CAGTAGAGAC AAAGAGTCTT
GACTTGGCAG CATCAATCAT TGACGCATCA GTTAATGCAG GCGCAAACAA AGTAGACTCT
GTTTACTATT CACTGTCTAC TGAAACCCAG ATGAGTCTCA AAGACCAGCT TCTTGAGCAG
GCCGTAATCA ATGCACAGGA AAAGGCCAAA AATGTATTAG CTCCACTTGA CCAGAAAATA
ATTGGTGTAA AGAGCATCTC TGTTTCTGAA TTTGGAATTC CAACACCATA TCCAGTATTT
AGCGGCAGCA ATATGGTCTT TGATGCAGCA ATGAAGAGCA GTTCAACACA GCTGTTCTCA
TCAGAACAAG ATGTCACAGC ATCAGTTCAC GTTGTCTTCC ACATAGGAAG CAACTAA
 
Protein sequence
MNKKQLTVVM LSVLVVAVSA TAVSSEADAQ KPTSMLSFEK TIDVVGIGMI STDPDLLTIR 
LGLETKGDTA NDALTANSAQ MSKILQALKS VGISESEIST SSLNIRPQYE YVYDETRDRD
TRTLVGYEAS NIVTVETKSL DLAASIIDAS VNAGANKVDS VYYSLSTETQ MSLKDQLLEQ
AVINAQEKAK NVLAPLDQKI IGVKSISVSE FGIPTPYPVF SGSNMVFDAA MKSSSTQLFS
SEQDVTASVH VVFHIGSN