| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1335 |
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| Symbol | |
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| ID | 5774681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | - |
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| Start bp | 1223763 |
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| End bp | 1224590 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 641316980 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001582669 |
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| Protein GI | 161528843 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0000063147 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTGCTGG AATTTCTTGA CCAATACTCA TTTGACATAT TGGGAAACAC GATTGGACTG
GGTCTAGTAG CTACGTCATT GGTTTTTTTG TTGGCAGGAT TTACAATCGC GTCAATCTCA
AAATCCGTTT TTACAAAGAA ATTTGCATCA AAATTGCCCG AGCATACATC AAAAAATATT
GGGAAATTGC TGTACTATGG TATAATTTTG CTCTCCTTTG CAGGTGTAAT GACAAGCACA
GGAATAGATC TTAGCGGTCT ATTGGTGGCA GGAGGTATTT TTGGAGTGGT CATTGGATTT
GCCACACAAT CAGTCGTATC CAACTTAATT TCAGGCATAT TCTTAATGAT AGAAAAGCCA
CTCAAGCATG GCGATACAAT AGAAATTCCA GACATGGATG TGCTTGGAAC TGTATTGGAC
ATTACAATGT TCTCCACAAT GGTCAGAAAG TTTGATGGAA CAACAATGCG AATTCCAAAT
GACAAAGTAT TCACGTCAAG AATTCGAGGA TTTTCTTCAA CAAATGCAAG ACGTACATCT
GTCTCAGTAG GAATCAGCTA TTCTGCAAAT ACCAAGAAGG CAATTTCCAA ATTGAAACAA
ACTTTGAATG AAAAAATGCC CTATATTTTG GCAAAACCCG AGCCGGAAAT ACATGTTACA
GAGCTTGCAG ACAGCAGTGT GAATTTACAA GTTATGGTCT GGCATCACAG GGATCACTGG
GGCAAAGTCT ATCCGGAATT GTGTGAGGTA GTAAAAACTA CTCTTGATGA GAACGGTATA
GAAATTCCAT TTCCTCAAAG AGTCGTAGAA ATTCACAACA AGAATTAA
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| Protein sequence | MVLEFLDQYS FDILGNTIGL GLVATSLVFL LAGFTIASIS KSVFTKKFAS KLPEHTSKNI
GKLLYYGIIL LSFAGVMTST GIDLSGLLVA GGIFGVVIGF ATQSVVSNLI SGIFLMIEKP
LKHGDTIEIP DMDVLGTVLD ITMFSTMVRK FDGTTMRIPN DKVFTSRIRG FSSTNARRTS
VSVGISYSAN TKKAISKLKQ TLNEKMPYIL AKPEPEIHVT ELADSSVNLQ VMVWHHRDHW
GKVYPELCEV VKTTLDENGI EIPFPQRVVE IHNKN
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