Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nmar_1320 |
Symbol | |
ID | 5774527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosopumilus maritimus SCM1 |
Kingdom | Archaea |
Replicon accession | NC_010085 |
Strand | + |
Start bp | 1206022 |
End bp | 1208469 |
Gene Length | 2448 bp |
Protein Length | 815 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 641316964 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_001582654 |
Protein GI | 161528828 |
COG category | [R] General function prediction only |
COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000000000720865 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCACGTCT CATGTAGTGG TTGTGGAATA GAAGATCTCC TAGAGTTCTC AAAGAATGTA GATGAAGTGT TTTTAGAATT TCTTTCAAGA TATGACAAGG GACTAGTCAC AGAGAAAGGA CTTTCTGAAG GCCTCAAAGA TGAGGGAATT GTCCGTGCTG AAGTTGAAAT CAAAAATATG ATTGGCAAAA ACAAGCCAGA CAAAATAACT GAAGAGATTC TATATTCCAA AAAAGACTAT GTTTCACAAT ACAAGGTTTT GAGCAATCCT GAGCCTAAAA TGGGCTGCAA AGTAGAAGAT TTGGGACTAG ATGAATCAAT TACAGAACAT CTAAAGGAAT TGGAAATAAA ACAGTTTTAC AAATTCCAAG AAGAGGCAAT TAGTGAGATT GCATATGGAG AAAATGTAGT AATTGAAGCT CCAACTGCTT CAGGAAAAAC AGAAGCCTTT TTGATTCCAG TAATTCAGAG AATAAAAAAA GATTCCAGCG AAGGTAATGT CTTTGCAATC TTTGTATACC CAACAAAAGC ACTTGCACGA GACCAATTCC CTAAAATCAA AAAATTTGTA GAAAAGATTG GGGTTAGAGT AGAGGTCTTT GATGGAGACA CAAAACAAAA CGACAGAAGA GAAATAATTG ATAATCCACC ACAAATTCTT GTTACAAACT TTGATGTATT GCACTATCAT ATGTGGCACC AAACAAAATT CTCATCATTA CTAACAACAA CAAGAATTAT AGTTACAGAT GAAGCACATG TCTATTCAGG AATTTTTGGT TCTAATGTTC ACTATATCAT AAAGAGACTC AAAAGAGTAT GTACAAACAA GCTGCAATTT GTTGCGGCAT CAGCTACACT TGAAGATGCA AAAGAATTTT GTGAAAAATT GTTTGGAGAA AAGATGCAAA AAATTCAAGG GTCAGGAAAG AAAGGCCAGA CAGACTTTGC AATGCTTTTC CCATCACTTC GAACTCAAAG GGCTTTGATG GTAGAACTCA CAAAGAAACT AACTGAGAAA AATCACAAGA CTATGGTCTT TAACAACTCG CATCTAAATT CCGAACTTTT AGCAATTCAG GCAAAAAAGC AAAAGGTCAA CATCAAAGTT CACAGAGCAG GACTGATGGC AAATTACAGA ACATTTGTTG AAAAACAGTT CAAAGATGAT TTACTTGATG CAATTTCATG CACTCCCACG CTTGAATTAG GCATAGATGT GGGAAATGTT GACTGTGTTA TCTCATCTAC CATACCAGTA AATCGACTAA TCCAAAGAAT AGGAAGAGCC GCAAGAAAGG GTCAAAGAGG TTATGCATTT TTGGCATTGG GAAATGACCC AATATCACAA TATTACAAGA ATCATCCAGA TGACTATTTT GAGGATACTG AAAAAACCTA CATCGATCCC AAGAATCCAT TTGTAGAAGA GTTCCAGGTA TTAGCAATGG CATGTGATAG ACCAATCTCA AAACATGAGC TTAAAGAACA TCAAGAAGTA ATAGAGCACC ACATCATCAA AGAGAATCTA AAAGAATTCA ACAATAGAAT AATTCCAAAT TTTGACAAGA TCAATTCTTT ACTCAATGAA TACAGTATTA GAGGAATAGG ACAATCAATT GATATTTTCT TAAATGGTAA AAAAGTAGGA GATAGAATTT TACCAATTGC ATTAGAGGAG TTACACAAAG ATGCAATCTA TTTTCTTGCA GGTATTCGTT ATAAAGTAAA AGAGTTTGAT TATCCAGAAA AAAACTATGC AAAGATTGAG AAAATTCCAA GAGATTATCC ATACTATACT AAAGCACTAA CTGAAGAATG GCCTACAATT GAGACAGTTT TTGATAAAAG GATTGCAAAC GGAGTTGAAG TTGCATTTTG TAAACTACAC ATTGAGAAAA AAGTATACGG CTATGTCAAC ATTGAGCTTG GACAAGAAGT AACACAAGGA GAAAAAGTTC TGCTAGATAC ACCTCTAGAA TATGATTTTG TTACAAAGGG GATTGTCTTT CATGCACCTA GACCTCTCAA AGTAATGGGA GAATCTGAAG ATGAGGAATA TACTGAAGCC AGCGGATACC ATGCAACAGA GCATGTAGTG ATTGAGGGAA GCAATATGAT TACTGGTGGA GTCTCTCAGG ATTTGGGAGG CATATCACTG GGAACATCAG GCTTGATTTT CATCTATGAT GGGGCAATTG GAGGAAGTGG GGCAAGCAAA GCTCTCTATG ATAGATTTGA GCAGGCACTG GAGAGAAGCA TGTTCATTGT AAAGGAATGT CCATGCAAAA ATGAAGCCGG ATGTCCAAGA TGTACATTCT CATACAGATG TGGAAACAAC AACGAATATC TGCACAAATA TTCAGCACTA GAGATTTTGG AGAGAATTAA CAAAGGAGAG AAAACAGAAC TAGTTGATCC AACTGAAGGT GACAGACCTC TAGTATAA
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Protein sequence | MHVSCSGCGI EDLLEFSKNV DEVFLEFLSR YDKGLVTEKG LSEGLKDEGI VRAEVEIKNM IGKNKPDKIT EEILYSKKDY VSQYKVLSNP EPKMGCKVED LGLDESITEH LKELEIKQFY KFQEEAISEI AYGENVVIEA PTASGKTEAF LIPVIQRIKK DSSEGNVFAI FVYPTKALAR DQFPKIKKFV EKIGVRVEVF DGDTKQNDRR EIIDNPPQIL VTNFDVLHYH MWHQTKFSSL LTTTRIIVTD EAHVYSGIFG SNVHYIIKRL KRVCTNKLQF VAASATLEDA KEFCEKLFGE KMQKIQGSGK KGQTDFAMLF PSLRTQRALM VELTKKLTEK NHKTMVFNNS HLNSELLAIQ AKKQKVNIKV HRAGLMANYR TFVEKQFKDD LLDAISCTPT LELGIDVGNV DCVISSTIPV NRLIQRIGRA ARKGQRGYAF LALGNDPISQ YYKNHPDDYF EDTEKTYIDP KNPFVEEFQV LAMACDRPIS KHELKEHQEV IEHHIIKENL KEFNNRIIPN FDKINSLLNE YSIRGIGQSI DIFLNGKKVG DRILPIALEE LHKDAIYFLA GIRYKVKEFD YPEKNYAKIE KIPRDYPYYT KALTEEWPTI ETVFDKRIAN GVEVAFCKLH IEKKVYGYVN IELGQEVTQG EKVLLDTPLE YDFVTKGIVF HAPRPLKVMG ESEDEEYTEA SGYHATEHVV IEGSNMITGG VSQDLGGISL GTSGLIFIYD GAIGGSGASK ALYDRFEQAL ERSMFIVKEC PCKNEAGCPR CTFSYRCGNN NEYLHKYSAL EILERINKGE KTELVDPTEG DRPLV
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