| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1301 |
|---|
| Symbol | |
|---|
| ID | 5773472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 1191274 |
|---|
| End bp | 1191957 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 641316945 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001582635 |
|---|
| Protein GI | 161528809 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1339] Transcriptional regulator of a riboflavin/FAD biosynthetic operon |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000141182 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAAC TAAAAATTCA GCACATCCTA ACTTTATCTT ATCTTCTCTC AAAAGGTGCT
AAACACAACT ATGTTTCAAT AACAACCTCT TCATTGGGAA AGAGCATAAA AAAATCACAA
CAAGCAGCAT CAAAACATCT GCTGGAACTA GAACAAAATC AATTCATTGA TAGAATTATG
AGTGGACGAA ATGTTTCAGT AAAGATTACT CCAAAGGGAT TTTCTGAAAT GGTAAAACTT
TCTACAACTC TACAAAAGAG TTTGAACTCA TTTCCATCAC ATGTTGAACT AAAGGGAACT
TTGGTTTCTG GAATGGGAGA AGGCGCATAT TACATGGGGC TAAAAGGATA TACCAAGCAA
TTCAAATCAA AAATTGGCTA TGTTCCATTT CCTGGAACTC TTAACGTGCG ATTAGACAAA
AAAATCCACC AAGAAGCAGT CAAACAATTT GAAACTCTAG ATGGGATCAA AATTAAGAGC
TTTTCAGATG GAAAGCGAAC TTATGGTTGG GTCAAGTGCT TTCCTGCAAA ACTAAACAAT
TCAATTAATT GTGATATGAT TCTTCTTGAG CGCACTCATC ATGATAATTC TGTTGTAGAA
TTAATTTCAA AAACCTGTAT GAGAAAGACT GGAAAACTAA AGGATGGCTC TAAAATAACC
ATCAAGATAC CAATTTCATC TTAA
|
|---|
| Protein sequence | MPELKIQHIL TLSYLLSKGA KHNYVSITTS SLGKSIKKSQ QAASKHLLEL EQNQFIDRIM
SGRNVSVKIT PKGFSEMVKL STTLQKSLNS FPSHVELKGT LVSGMGEGAY YMGLKGYTKQ
FKSKIGYVPF PGTLNVRLDK KIHQEAVKQF ETLDGIKIKS FSDGKRTYGW VKCFPAKLNN
SINCDMILLE RTHHDNSVVE LISKTCMRKT GKLKDGSKIT IKIPISS
|
|---|
| |