| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1295 |
|---|
| Symbol | |
|---|
| ID | 5773438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1185192 |
|---|
| End bp | 1186034 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641316939 |
|---|
| Product | lysine biosynthesis enzyme LysX |
|---|
| Protein accession | YP_001582629 |
|---|
| Protein GI | 161528803 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) |
|---|
| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family
[TIGR02144] Lysine biosynthesis enzyme LysX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00562119 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCCTG ACGTTACTAT TCTTTATGAT ACCATCCGTT GGGAAGAAAA AGGCCTCTTA
GAAGCAGGTA AGAAAAAAAA CATCAACATC CAGATGGTTG ATTGTAAGAA GTTAGCAGTA
GATTTAGAAA AAAAACCTGA AGATTATGGT GTAGTTATAC AAAGATGTGT AAGTTATTAC
AGAAACTTGC ATTCAACTGC AGCTCTTGAA GGTTTGGGAG TCAAAGTAAT CAACTGTCTT
AACACTGGAA TCTTTGCAGG AAACAAGTTA TTCACACACA TGCTACTAAA GAAAGCTGGA
GTTCCAACGC CAGATGCAAC AGTTGCTTTC TCAAAAGATG CAGCCCTTGA AGCATTGGAT
ACGCAAGGAT ATCCCAAAGT AATCAAACCA ACAGTTGGAA GCTGGGGCAG ACTAATCTCA
AAATTAAATG ATAAAGATTC TGCTGAGGGG GTTATTGAAA GCAGAGAGAA CATGTATCCA
ATTTATCAAG TTCATTATCT AGAAGAATTT GTAAAAAGAC CACCCAGAGA CATTAGAGCA
ATTATGGTAG GAGACAAAAT TGTTGCAGCC ATATACCGCA ACTCCAAGCA TTGGAAAACA
AACATGGCTC TTGGAGGAGT TGCAGAACCA TGCGAAGTAA CACAAGAAAT GGAAGAAATG
TGTATTAAGG CAAAACATGC AGTTCAAGGG GATATTGTAG GAGTAGATTT GATGGAAAGC
GAAGAGAAAG GATTAGTGGT TCACGAAGTA AATAATACAA CAGAATACAA GAACACTGTT
AGAGTATGCG AAGTAGACAT TCCTTCGTTA ATGCTTGATT ATGCACTAAA GATAGAGAAG
TAA
|
|---|
| Protein sequence | MSPDVTILYD TIRWEEKGLL EAGKKKNINI QMVDCKKLAV DLEKKPEDYG VVIQRCVSYY
RNLHSTAALE GLGVKVINCL NTGIFAGNKL FTHMLLKKAG VPTPDATVAF SKDAALEALD
TQGYPKVIKP TVGSWGRLIS KLNDKDSAEG VIESRENMYP IYQVHYLEEF VKRPPRDIRA
IMVGDKIVAA IYRNSKHWKT NMALGGVAEP CEVTQEMEEM CIKAKHAVQG DIVGVDLMES
EEKGLVVHEV NNTTEYKNTV RVCEVDIPSL MLDYALKIEK
|
|---|
| |