| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1247 |
|---|
| Symbol | |
|---|
| ID | 5773149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1144197 |
|---|
| End bp | 1145837 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 641316891 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001582581 |
|---|
| Protein GI | 161528755 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTAG GAAAAAATAA AATTTTATGG GGATTATTAG GATTAATCAT AATATCGGTT
ATAGTCACAG GATTCTACAT TAATGATTTT ACAAAAACAA ACATTCGTGA ATCACTAATT
GAAGAAAAAA CTGAAATCCA AATGATTATG ACCAAAAGTC TTGCAGCATC TGTTAATTCA
GAGTTTCAGA GACTTTTGAC AGATATGAAA ACTATTTCAG AATCTGCACA AGTTCAAGAA
AGTCTAACAA GTAGTCAAAC ACAAGAATAT CTTTCAAACA GATGGAATAA TATTAATTCA
ATTACAAAGA TCTCAGACAT ATTTTTGACA GATGACTCAC TTACAATAGT ATCACAGGTA
AATGATGAAA AATTTCGCCT AGTGGGATTA AATTTGCAAA ATATTCAATC TAGTGAAGAA
TTCAAGGCTA AACCAGGGTA TTCAGGAGAG ATATTTAGCA CAGATGGGAT TTATCGAGTA
CTTGTATCAA GCCCAATTAT TGATTCAGAA TCAGGGGAAT TCAAAGGGAT TGTGTTTGGG
ATAGTTGAAC CATCAGAAAT CATCTCAAAA TATATCGGAA TTTATGAAAT TGACATATCA
TCGATTACCA TATTTGATGA AAATCAAAAA ATCCTATTTG CTGAAAATAC TGATTTACTT
GGAAAAGAAT TTTCAAGTTA TTTTGCACAA AGATATTTTG GGGAAAATGA AATTCAAAAT
TCTCATTATG AAAATATTTT CTTAGGAAAT ACAGATTCAT TTGTGTATGA AGCACATAGA
TTTGGAGATG TGATAAGCAC AGGAACTCCT GTATCAATAG AAGAAAAAAA CAGATTCTTT
TTCTTTGTAA CAACTCCAGT AAATCAAATA GTTGAAGATA TTGAAGACAA TCTATTTGTT
GAGGATCTAA AGAATAATTT AATTTTATTT ATAATAACAA TTTTGTTTAT TGTGATTGTC
ATTAAACGAG TTAGATCGAT TGAAAATGAA AAACTGTTAG TCATAGGACA GCTTGCATCA
AACATTGCAC ATGATATAAG AAATCCTCTT GGAACTATAC GTAGTTCAGT TACAAGAATT
GAGAAACAAA ATGAAACAAT AAATGAAACA ATAAATCAAG AAACAGAAAG AATCAAACGC
TCAGTTGCAA GAATGAATCA CCAAGTAGAA AGTGTCTTAA ATTATGTAAG AACAACTCCC
CTCAATTTAT CTGAAAACTC ACTAAATGAT TTAATTCAAT CATCTATAAA CTCACTTGTC
ATCCCAAAAA ATATTGAACT TAACATTCCA AAAGAAGACA TAAAATTTGA ATGTGATTCA
GATAAATTCA AAGTTGTTTT TGAGAATCTA CTGCTAAATG CAGTTCAGTC AATTGATTCA
AAAGAAGGTA AAATTAGCAT AAATTCAAAC CAAAACGAAA AAGAAATTAC AATATCATTT
GAGAATTCGG GTCCAAATAT TACAGAAGAA AACATTTCAA AAATTTTCAG GCCACTCTTT
ACCTCAAAAC TTAAAGGAAC AGGACTTGGT CTTTCAAGTT GCCAGAACAT TATCACGCAA
CATCAAGGTA CAATTTTGGT GACAAATAAT CCAGTAACAT TTACCATTAA AATCCCAAAA
AATTTAAGGA AAGAAAAGTA A
|
|---|
| Protein sequence | MALGKNKILW GLLGLIIISV IVTGFYINDF TKTNIRESLI EEKTEIQMIM TKSLAASVNS
EFQRLLTDMK TISESAQVQE SLTSSQTQEY LSNRWNNINS ITKISDIFLT DDSLTIVSQV
NDEKFRLVGL NLQNIQSSEE FKAKPGYSGE IFSTDGIYRV LVSSPIIDSE SGEFKGIVFG
IVEPSEIISK YIGIYEIDIS SITIFDENQK ILFAENTDLL GKEFSSYFAQ RYFGENEIQN
SHYENIFLGN TDSFVYEAHR FGDVISTGTP VSIEEKNRFF FFVTTPVNQI VEDIEDNLFV
EDLKNNLILF IITILFIVIV IKRVRSIENE KLLVIGQLAS NIAHDIRNPL GTIRSSVTRI
EKQNETINET INQETERIKR SVARMNHQVE SVLNYVRTTP LNLSENSLND LIQSSINSLV
IPKNIELNIP KEDIKFECDS DKFKVVFENL LLNAVQSIDS KEGKISINSN QNEKEITISF
ENSGPNITEE NISKIFRPLF TSKLKGTGLG LSSCQNIITQ HQGTILVTNN PVTFTIKIPK
NLRKEK
|
|---|
| |