| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1220 |
|---|
| Symbol | |
|---|
| ID | 5773651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1121044 |
|---|
| End bp | 1122180 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 641316864 |
|---|
| Product | dehydrogenase (flavoprotein)-like protein |
|---|
| Protein accession | YP_001582554 |
|---|
| Protein GI | 161528728 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
|---|
| TIGRFAM ID | [TIGR02032] geranylgeranyl reductase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTACTACG ATGTAGTTGT TGCAGGGGGT AGTGTTGCAG GATTACTTTG TGCAAGAGAG
ATTGCTGCAG ATGGTTTTTC AGTATTAGTT ATAGAAGAAG ATTATGAAAT AGGCACACCA
GAACATTGCG GTGGTTTAGT TAGTATTTCA GGACTACAAG AGTTAGGAGT AATTCCATTT
AGAAAGACAT TTGATCATAT GATAGAATCA GCTGAAATAA CTGCTCCTAA CGGAAAAAGT
TTTTCGATAA ACTCAAAAAA TCAAAAGGTC ATAGAAATTA GTAGAAGAGA ACTGGACAAA
CAAATTGCTT TTCAAGCCCA AAAAAATGGA GCTACAATCA AAGTCAGAAC TAGTTTTCAA
GAGATGACCA ATACGGGAGT TAGAACAAAT GAAGAAAATA TAGATTGTAA AATTTTTGTT
GATGCAAGAG GAGTATCATC TTTAATTCAT AAAGACAGAA CAGGGATTTT ATCATCTGCA
CAATACGAAA TCTATGCAGA CTGGATAAAA AAAGGAAAAG TAGAAGTGAT CTTTGATCAA
GACAAATATC CAGGTTTCTT TGCATGGATA ATTCCATCAA ATGAAGGGAA GGGAAAGATT
GGTGTTGCAG GAAAAGGCAT CAATGTTTCA GAAACAATGG ACAAAATTCT TGCAGAGAAA
GGCAAGCATT CTACAATAAG AAAGATTTTT GCGCCAATTT GGGTAAAAGG ACCAATTGAA
AAATTTGTAG AAGGAAATAC CGTAATTGTA GGAGATGCTG CAGGACAAGC AAAACCAACT
ACTGCAGGAG GTATTTTTAC TAGCGGTATG GGAGGAGTTT ATGCAGGACA AGCAATATCA
GAATTTCTAA AAACAGATGA AAAATCAAAA CTAGAAGTAT ATCAAACTAG ATGGACAGAT
AGATTTGGGA AAGAGTTTGA AAAACAAATT TTTGCAAGAA AAATTTTAGA AAGACTAGAC
AATAACACAA TCAACAAATT ATTTGAATCA ATAACACCTG AAATCCTAAA AGATATTTCA
GAAAAAGATG ATTTTGATTT TCATACAGGT TCAATTGTAA AACTATTAGG ATTAAAGGGA
TCAATCAAAA CAGCTCAAAC ACTAATCGGT GGAGAATTCA AAAAACTACT TCGATAA
|
|---|
| Protein sequence | MYYDVVVAGG SVAGLLCARE IAADGFSVLV IEEDYEIGTP EHCGGLVSIS GLQELGVIPF
RKTFDHMIES AEITAPNGKS FSINSKNQKV IEISRRELDK QIAFQAQKNG ATIKVRTSFQ
EMTNTGVRTN EENIDCKIFV DARGVSSLIH KDRTGILSSA QYEIYADWIK KGKVEVIFDQ
DKYPGFFAWI IPSNEGKGKI GVAGKGINVS ETMDKILAEK GKHSTIRKIF APIWVKGPIE
KFVEGNTVIV GDAAGQAKPT TAGGIFTSGM GGVYAGQAIS EFLKTDEKSK LEVYQTRWTD
RFGKEFEKQI FARKILERLD NNTINKLFES ITPEILKDIS EKDDFDFHTG SIVKLLGLKG
SIKTAQTLIG GEFKKLLR
|
|---|
| |