Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nmar_1037 |
Symbol | |
ID | 5773689 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosopumilus maritimus SCM1 |
Kingdom | Archaea |
Replicon accession | NC_010085 |
Strand | + |
Start bp | 910852 |
End bp | 912618 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 641316679 |
Product | DNA ligase I, ATP-dependent Dnl1 |
Protein accession | YP_001582371 |
Protein GI | 161528545 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGTTTT CTATCTTAGC TGATTCGTTT AACAAGATGG AATCAACTAG AAAAAGATTA GAACTAACAC AGTACTTGGT AGAATTATTT AAAAAAACTC CACAAGAAGT GATTTCAAAG ATAGTCTATT TACTTCAAGG AAAACTAAGA CCAGACTTTG AAGGAGTGGA GTTGGGAGTT GCAGAAAAAC TTGCAATAAG AGCAATCTCA AAATCTTCAG GAATACCAAT TAAAAAAATT GAAGAAGAAT ACAGAAAAGG TGGAGACTTG GGGCATGCAG CCACTACAAT TCTAGAGCAA AAAACGCAGA CAACATTTCT CGTAGAAGAC ATTACAGTTG AACGAGTCTA TGAGACATTA TTCAAGATTG CAAAGTTAGA GGGCAATAGA TCACAAGACA TGAAGATGAA ATACATTTCA AGCTTACTTA ATGATGCAAG TCCGTTAGAG GCAAGCTTTA TTCTAAAAAT ATTGTTAGGT ACACTAAGAC TAGGAATTGC AGAAAATACT GTAATGGATG CATTAGCATT AGCATTTTCA GGCAACAAAG AAAATAGAAA AATTTTGGAG CATGCATACA ATGTTTCTAG TGATTTGGGA AAAGTTGCAG AAGTTTTAGC AACTGAAGGA TTAGCAGAAG TTGAAAAATT CAAAATAATT TTGTTTAATC CAATCAGACC AATGCTTGCA GACAGAGTAA AGAGCGAACA AGAAGCAATT GAAAAAATGG GGAATGAATT TGCAGCTGAA TACAAATTAG ATGGAGAAAG AGTACAACTA CACATAGAAG GAGACAAAGT AGTTTTATTT TCAAGAAGTT TAGAAAATAT TTCAAGTTAT TATCCAGATA TTATAGAAAA AATTCCAAAA ACAATTCAAG CAGAAAATAT TGTACTAGAG GCAGAAGCAG TAGCAATCAA TGAAAACACA GGAGAGTTTT TGCCATTTCA AGAATTAATG CATAGAAGAA GAAAATACAA AATAGAAAAA GCAGTTACAC AATATCCCAT AACGGTAAAT CTCTTTGATA TCTTGTATTG TAATGGAAAG AGTTGTCTTG AATTAGACTA TAAAGAAAGA AGAGAAAAAA TGGAAAAAGT GGTAAAAGAA GATGATTTTG TAAAGCACAT TCCCATGGCC ATTGTCAAAA ATGAAAATGA TATTGAAGAC TTTTTTGAAA ACAGCATCAA TGCAGGAAGT GAAGGACTAA TGCTAAAGAC GCTTGTTAGT CCATATCAAG CAGGTTCAAG AGGAAGTCAC TGGTTAAAAC TGAAAAGAGA ATATCAAAAT GAACTTGGAG ATAGTTTAGA TCTTGTTGTG ATAGGAGGAT TCTTTGGGAA AGGAAGACGG ACAGGAAACT ATGGAACTTT ATTGTTAGCA ACATACGAAG AAGATGAAGA TACATTCACC AGCATTTGTA AAGTTGGAAC AGGTTTTTCA GATGAAGATT TAGATCAATT ATATCAAATT CTAAATCCCA AAGTAACAAT CAAGAAAAAT CCGCGTATTA ATAGTGAAAT GGAAGCAGAT GTTTGGTTTG AACCAGAATT AGTAATAGAG GTGGTTGCAT CAGAGATTAC ACTTAGTCCA ATTCACAAAG CAGCTAGAGA CAAAATTAGA AAGGGAGCAG GACTTGCATT GAGATTTCCA AAATTTACAG GAAAGATGAG AGTTGAAAAA ATGGCAGAAG ATGCATCTAC TAATGAAGAA GTGATCACAT TATACCAAGG TCAGAAAAAA GTGGCACATG ACAAAAGTCT CATGTAA
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Protein sequence | MEFSILADSF NKMESTRKRL ELTQYLVELF KKTPQEVISK IVYLLQGKLR PDFEGVELGV AEKLAIRAIS KSSGIPIKKI EEEYRKGGDL GHAATTILEQ KTQTTFLVED ITVERVYETL FKIAKLEGNR SQDMKMKYIS SLLNDASPLE ASFILKILLG TLRLGIAENT VMDALALAFS GNKENRKILE HAYNVSSDLG KVAEVLATEG LAEVEKFKII LFNPIRPMLA DRVKSEQEAI EKMGNEFAAE YKLDGERVQL HIEGDKVVLF SRSLENISSY YPDIIEKIPK TIQAENIVLE AEAVAINENT GEFLPFQELM HRRRKYKIEK AVTQYPITVN LFDILYCNGK SCLELDYKER REKMEKVVKE DDFVKHIPMA IVKNENDIED FFENSINAGS EGLMLKTLVS PYQAGSRGSH WLKLKREYQN ELGDSLDLVV IGGFFGKGRR TGNYGTLLLA TYEEDEDTFT SICKVGTGFS DEDLDQLYQI LNPKVTIKKN PRINSEMEAD VWFEPELVIE VVASEITLSP IHKAARDKIR KGAGLALRFP KFTGKMRVEK MAEDASTNEE VITLYQGQKK VAHDKSLM
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