Gene Nmar_1012 details

Gene Information

• Locus tag: Nmar_1012
• ID: 5774766
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 888128
• End bp: 888601
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 641316651
• Product: UspA domain-containing protein
• Protein accession: YP_001582346
• Protein GI: 161528520
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0589] Universal stress protein UspA and related nucleotide-binding proteins

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 41
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTATAAAG CCATACTTGT TCCTCATGCA GGAACTCCAG CAGGAGACAA TGCACTAAAA 
CATGCAATAC ATGCTGCAAA GAATTCATCT GCCAAGATAA TAATCCTACA CATTATTGAA 
GAGATTCAAA GGCCACCAAT ATCATTTGGT CTAGCAGAGT CAGAAAGAGA GAAAATATTT 
GACAGTATCA AAGATGCAAA TGAATCAATA CGTCAAGAGA TGGAAAAAGT GATGGAAAAA 
CTTAGTCAAC AATGCAATGA TGAAAGCATT GAAACCAAAG TTAAAGTTGA GATGGGAGAT 
GCAGCTGAGA TCATTCTAGA TACAATTCAA AATGAGAATA TAGATTTAGT CGTAATGGCA 
AAACGTAGAA AATTAAAAGG AGTAAAAAAA CTGTTGTCAC TAGGAAGCGT ATCTAGAAAA 
GTAGTAGAAA ATGTTACTTG TCCGGTTATT TTGCTTGATG TTGATAATAC TTAG 

 

Protein sequence

MYKAILVPHA GTPAGDNALK HAIHAAKNSS AKIIILHIIE EIQRPPISFG LAESEREKIF 
DSIKDANESI RQEMEKVMEK LSQQCNDESI ETKVKVEMGD AAEIILDTIQ NENIDLVVMA 
KRRKLKGVKK LLSLGSVSRK VVENVTCPVI LLDVDNT