| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0986 |
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| Symbol | |
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| ID | 5773305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | + |
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| Start bp | 861646 |
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| End bp | 863085 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 641316625 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001582320 |
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| Protein GI | 161528494 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.461111 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAAGTA ATTTTAAAAA AATTTCTTGT CTTTTAGCAA TTATCATACT TTGTACACAA
AGTTTTACAG GAATTTCGTT TGCTCAAATT AATCAAGAAC CTGAAGTGAT GTTTAATCAA
GCAACAGAAT TGTTTCACAA TGGCGAGTAC AAGGAAGCAA TATCAATTTA TGATGACATA
CTAGAGATTG CGCCAAACAA CATTTCCACA TTAAAAATGA AAGGAATAGC TCAGAGTAAT
CAAGGGGATC ATAAAAAATC GCTAGAACAA TTCTTTACAG TTTTACAACA CCGACCAAAT
GATGTCATAT CATTAGCTGG AATGGGTGTA GGGTTAGGAT ATTTAGGTGA ATATCAAGAG
GCAACATCAT ATTTTGAAAA GGCACTCAAA GAAAAGCCAA ATAGCATAGT CATACAAAAT
TACATGGAAT TTATCAATAA TGTAATTACG AAATATCCAT ACACACCTAC AGAAAAGCCT
GATGGGTTAG ACGGAAAAAC AACCGCATCC ATTCCAGATT GGGTAAAACC GATAGCAAAA
TGGTGGTCAA CAAATAGTAT TGATGATGCA GAGTTTGTTT CAGCATTAAT GTTTATGATT
AATAATAAAA TTATTGAAAT TCCTCCAGTC GAGACACAAG AAGTTTCTGA AGAAAAAATC
CCAGAGTGGA TAAAGAACAA TGCAGGGTGG TGGGCAGATG GAGAAATTGA CGATGATGCA
TTTGTTCAAG GAATACAATA CATGATAGAA AAAGGATTAA TCATAATCAA AGTTGAAGAA
GCAACACAAA AAACACAAGA GGAGTTAGAT CATGAATTTT ATCTGTTTGA AAGATATCTA
AGAGACATTT CAAACAACAT ATCAAAAGAA AAGCGTTACA TAGAATTTCC AAACCCTAGT
CAAGATGTAA TCAAAAAATT TCTCAGAGAT TATGTAAAAT GGAATTTTGA AGAAGAAGTA
AAGAAAGCAT CTAGTAAATT CCCAGATCCC ACATACGAAA TTATTGATGA CACATACATT
GTATATTACA AAGTGTACAT TAATGAGCAA CCCTCTGGAT TGCCACTAGA TCACGTCAGC
ACATTAACTG ACTCATTTGC ATTTTGGGAA CAACAAGAAT TGTCAGTTAA TAATCAAAAA
TTAAAAATAA AATTCGAGGT AACAAACTTG AAGCATGAAG CAAATGTTTG GGTAACATGG
GTAGTTCGAA ACCTTGGTGA AGGGGTTTTA GGACATGCAC ATCTTGGTAA AGGAATTGTC
GAAGTAGCAT TAGGTGATTT CAATTGTGAT GGAAGTTTTC AATTGTATGA TGTAGATAGT
GTAAGAACAA TCATGACACA TGAGTTAGGT CATTCTATAG GTTTGAAACA TGTCGAGGAT
AGAACAAGTA TAATGTATCC ATCATTCAAT CCTTCATACG CATATTGTTT GCTAAGTTAA
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| Protein sequence | MLSNFKKISC LLAIIILCTQ SFTGISFAQI NQEPEVMFNQ ATELFHNGEY KEAISIYDDI
LEIAPNNIST LKMKGIAQSN QGDHKKSLEQ FFTVLQHRPN DVISLAGMGV GLGYLGEYQE
ATSYFEKALK EKPNSIVIQN YMEFINNVIT KYPYTPTEKP DGLDGKTTAS IPDWVKPIAK
WWSTNSIDDA EFVSALMFMI NNKIIEIPPV ETQEVSEEKI PEWIKNNAGW WADGEIDDDA
FVQGIQYMIE KGLIIIKVEE ATQKTQEELD HEFYLFERYL RDISNNISKE KRYIEFPNPS
QDVIKKFLRD YVKWNFEEEV KKASSKFPDP TYEIIDDTYI VYYKVYINEQ PSGLPLDHVS
TLTDSFAFWE QQELSVNNQK LKIKFEVTNL KHEANVWVTW VVRNLGEGVL GHAHLGKGIV
EVALGDFNCD GSFQLYDVDS VRTIMTHELG HSIGLKHVED RTSIMYPSFN PSYAYCLLS
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