| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0606 |
|---|
| Symbol | |
|---|
| ID | 5774284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 541510 |
|---|
| End bp | 543081 |
|---|
| Gene Length | 1572 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 641316241 |
|---|
| Product | type I restriction-modification system subunit M |
|---|
| Protein accession | YP_001581940 |
|---|
| Protein GI | 161528114 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0286] Type I restriction-modification system methyltransferase subunit |
|---|
| TIGRFAM ID | [TIGR00497] type I restriction system adenine methylase (hsdM) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTGTCAG ATCAGAAACT TACTTTTGAA CAATTAGAAC AACGTCTTTT TGATGCAGCA
GACATTTTAC GAAAGCATCT AGATGCAAGT GAAAACAGAA AACCGGTACT TACATTATTG
TTTCTAAAAA GACTGAATGA TATTTTTGAA GAAAATGTTG AAAAACTGAT GAAAGATGAA
GGGCTCTCAA AGAAAGAAGC AGAAAACAAA AGAAGGCATC CAATATTTTA CTTGCCAGAA
GACACCAGAT GGAACAAATT ACAAAATGTT TCTGAAGATG TTGGGTCAAA AATTATAGAA
ATTTGTAAAA AAATAGAAGA TGCGAATCAG AAAAAATTAG GAGGCACCAT GATGGTGTCA
GAATTTAACA TCAAAGAGAA ATATCCAGAT ACTGCTCTAG TAAAATTAAT TGATCATTTC
AGTACAACAG ATGAAGGATA CTTTCGTCTT AGAAATTCAG ATTTAGAAAA TGAGGATATC
TTTGGGGATG CATATGAACA GCTTTTGGAA ATGTTTGCAA GTGAGACAAA AAAGAAGGGA
GGTCAATTCT ACACCCCAAG AAAAGTAGTA CAATTACTTG TAGAGTTAAT GGAGCCAAAA
TACGATTACA GGATAAATGA TCCTACTTGT GGTTCAGGGG GCATGTTAAT ACACTCAAGA
CAATATGTGG AAAAATCTCT AAAAAAAGAA AAAAAATCAA GTAAAGAAAT CGAAGAATTA
TTAAAAAATC TCACACTGCA CGGGCAGGAT AGTAATATCG ATACAGTAAA CATGTGCAAA
ATGAACATGG TTATTCATGG GGTTCCGTCA TTTTCTATAG AGTGGGGTGA TGTCCTAGAG
TCTCCAAAAT TTGTTAAAGA TGGAAAGTTA ATCGAGTATG ATAGAGTTTT AGCAAATTTT
CCATTTAGTG AAAATTGGGA AGCATCTGGA AAAGAAAATG ATGGATATGG ACGATTCAAG
TACGGAATCG CCCCTGCCAA AGACAAAGCA GATTTTGCAT TTATCCTTCA CATGCTATCT
AGTTTAAATG AAAATGGAAA GGCTGCAATT GTTTGTTCAC AGGGGGTTCT CTTCAGAGGT
AGTTCTGAGC AAAAAATCAG AGAAAATATG ATTGCAGGAA ACAAGGATGA AAACTTGCAA
GGAGATATGA TAGAGGCAAT AATTGCATTA CCTGTTGCAT TATTCTATGG AACAGGAATT
CCAGCATGTG TCTTAATCTT AAACAAAAAC AAACCAAAGG AAAGAAAAAA CAAAATTTTG
TTCATTTATG CAGCTAATGA ATTTCAAGAA GGAAAAGTAA GAAACAAGTT AAGAGACAAA
GACATCGAAC ATATTGTTAA GGCATTCAAG GCATTCAAAG ATGAGGATAA GTATTGTCAT
GTTGCAGAAC TCGATGAAAT CAGAGAAAAT GAGTTCAACC TCAACGTTCC TAGATATGTG
GATATTTCAG AAGAAGAAAA AATCATAGAC ATTCAGGCAA CAATAGATGA ACTCAAGAAA
CTGGACAAGG AAAGAGACGA GCTTGAACTA AAAGTCAAAC AAGATCTAAA GGAATTAGGA
TTCAAGGTCT AG
|
|---|
| Protein sequence | MLSDQKLTFE QLEQRLFDAA DILRKHLDAS ENRKPVLTLL FLKRLNDIFE ENVEKLMKDE
GLSKKEAENK RRHPIFYLPE DTRWNKLQNV SEDVGSKIIE ICKKIEDANQ KKLGGTMMVS
EFNIKEKYPD TALVKLIDHF STTDEGYFRL RNSDLENEDI FGDAYEQLLE MFASETKKKG
GQFYTPRKVV QLLVELMEPK YDYRINDPTC GSGGMLIHSR QYVEKSLKKE KKSSKEIEEL
LKNLTLHGQD SNIDTVNMCK MNMVIHGVPS FSIEWGDVLE SPKFVKDGKL IEYDRVLANF
PFSENWEASG KENDGYGRFK YGIAPAKDKA DFAFILHMLS SLNENGKAAI VCSQGVLFRG
SSEQKIRENM IAGNKDENLQ GDMIEAIIAL PVALFYGTGI PACVLILNKN KPKERKNKIL
FIYAANEFQE GKVRNKLRDK DIEHIVKAFK AFKDEDKYCH VAELDEIREN EFNLNVPRYV
DISEEEKIID IQATIDELKK LDKERDELEL KVKQDLKELG FKV
|
|---|
| |