| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0550 |
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| Symbol | |
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| ID | 5773329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | - |
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| Start bp | 490422 |
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| End bp | 491243 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 641316183 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001581884 |
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| Protein GI | 161528058 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.950076 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAAGA CATTTGCAGT TATTGGAGAT CCAATTGATC ATTCTTTATC ACCAAACATC
CACAGTGCAG CATTTAGAGA ATTAAATCTA GATTGCTCAT ACATTGCATA TAGAATTCCA
AAAGATGAGT TAGGTGAAGG AATTGAAGGT TTGAAAAAAA TCCAAATTGC AGGATTCAAT
GTAACTATTC CTCACAAAAT TGAAATGATG AAATATTTGG ATAAAATTGA CGAGTCTTGT
AGTTTGATTG GTGCAGTAAA TACTGTTGTA AGCAATGACG GAGTGCTAAA AGGATACAAT
ACAGATATGG ATGGTTTTCT AGAGCCATTA AAGAAACGAA ATATAGAGAT TGAAAACTCC
AATGTACTTT TGTTAGGTGC AGGAGGTGCT GCAAGAGCAA TTGTAGCTGG GTTTGCAAAA
GAAAAAGCAA AAAGCATTAC AATTGCAAAT AGAACAATAG AAAAAGCAAA TAATCTAGTA
GAATTTGCAA AAAAAATCAG TCTTGATGCA AATGCCATAA CTATAGACCA AGTTGGAGAA
TCTGCAAAAG ATTACAACAT TATTGTAAAT GCAACATCAA TAGGATTGCA AAATGAATCT
AGCCCAATAT CATTTGAAGG AGTTAATGAA AAAACAGTGG TGTATGATAT TGTGTATTTG
CCAATGAATA CAGATTTTCT AAAAAAAGCA AAAGAAAAAA ACGCCACTAT AATTTTTGGA
TATGAGATGC TATTAGGTCA GGCAGTCAGA GCGTTTGAGA TTTGGCACGG CATGGAAGCA
CCTTATAATG CCATGAAAAA AGCATTGTTA GGAGGATTCT GA
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| Protein sequence | MGKTFAVIGD PIDHSLSPNI HSAAFRELNL DCSYIAYRIP KDELGEGIEG LKKIQIAGFN
VTIPHKIEMM KYLDKIDESC SLIGAVNTVV SNDGVLKGYN TDMDGFLEPL KKRNIEIENS
NVLLLGAGGA ARAIVAGFAK EKAKSITIAN RTIEKANNLV EFAKKISLDA NAITIDQVGE
SAKDYNIIVN ATSIGLQNES SPISFEGVNE KTVVYDIVYL PMNTDFLKKA KEKNATIIFG
YEMLLGQAVR AFEIWHGMEA PYNAMKKALL GGF
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