Gene Nmar_0532 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_0532 
Symbol 
ID5773391 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp473435 
End bp474580 
Gene Length1146 bp 
Protein Length381 aa 
Translation table11 
GC content30% 
IMG OID641316165 
Productpseudouridylate synthase-like protein 
Protein accessionYP_001581866 
Protein GI161528040 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1258] Predicted pseudouridylate synthase 
TIGRFAM ID[TIGR01213] conserved hypothetical protein TIGR01213 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTACTT ATCAGAAAAT TATTCCCATT GCAAATCAGA TATTAAAAAA ATATGATTTA 
TGTGATCATT GCCTTGGAAG ACTTTTCACA AAACAGCTTT ATCTTTCATC AAATAAACTC
CTTGGGAAAA AATTAAAGAA AAATTCAAAA TCTTCTCAAA GATGTTATAT CTGTAAAAAT
CTATTCGATA ATTTGAATTA TTTTTTGAAT ATGATGATTG ATTCTGCATC TCATTACTCT
TATTCGTCAT TTAGTGTTGG CGCAACAATA AAGCCTTCAA TAATTGACAG AGATGATGTA
ATTCGTTCTA AATACAAACT AAAAGGAATT GATGGGATAA AGACTGATGT AACAAAAGAA
CTGGGAAAAT TATTTTCTAA AAAAACAAAG AAATCCTTTG ATTCTTTAGA TCCTGAGATT
GTTTTTACTG TAAATCTAAA AGATGAATTT TGTGACATTA GATCCAAATC ATTAACTCTT
TCAGGCAGAT ATGTTAAACC CGTACGAGGT TTCTTACAAA AACAAAAATC TTGTTCAAAT
TGTTCTGGTA AGGGGTGTCG AATTTGTGAT TTTCATGGCA TCAAAGAATT TGATAGTGTT
GAAGGAGAAA TTTCTCAATT TCTTTTTAAA AAATTAGGTG GCACCACTGC TAAATTCACC
TGGATTGGTG GTGAGGATAA ATCAAGCTTG ATTCTAGGCA CAGGAAGACC GTTTTTTGTC
AAGATCCAGA ACCCTCACAA AAGAAAATTG AGAGCAAAAT CTGCAAATCT AGAACACATC
AAAGTTAGTA ATTTCAAAAT TGTTGCAGAC TCTCCAAAAA AACCATTAAA ATTTAATTCC
TCAGTTGAAG CTAGAATTTC TACATCTTCA ATCATTGACG CAAAACTTTT ACGAAAATTA
AAAAATCTCA CAAAAAAACC AATTGCAGTT TATGAAAAGT CTGGAAAACG ATCTGAGAAA
AGAATACTTT CCATAAAATA TAAGAAATCT GATGAAACTT CCTTTACATT ATTTTTCAAA
TTTGAAGGTG GTTTACCTGT AAAACGTTTT GTTACTGGTG ATGATGTTTC TCCTGGAATA
AGCCAAATTC TTGATATGTC GTGTAAATGT CTTGAATTTG ATTTTCATGA TGTTGAAGTT
AAATGA
 
Protein sequence
MTTYQKIIPI ANQILKKYDL CDHCLGRLFT KQLYLSSNKL LGKKLKKNSK SSQRCYICKN 
LFDNLNYFLN MMIDSASHYS YSSFSVGATI KPSIIDRDDV IRSKYKLKGI DGIKTDVTKE
LGKLFSKKTK KSFDSLDPEI VFTVNLKDEF CDIRSKSLTL SGRYVKPVRG FLQKQKSCSN
CSGKGCRICD FHGIKEFDSV EGEISQFLFK KLGGTTAKFT WIGGEDKSSL ILGTGRPFFV
KIQNPHKRKL RAKSANLEHI KVSNFKIVAD SPKKPLKFNS SVEARISTSS IIDAKLLRKL
KNLTKKPIAV YEKSGKRSEK RILSIKYKKS DETSFTLFFK FEGGLPVKRF VTGDDVSPGI
SQILDMSCKC LEFDFHDVEV K