Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nmar_0450 |
Symbol | |
ID | 5772962 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosopumilus maritimus SCM1 |
Kingdom | Archaea |
Replicon accession | NC_010085 |
Strand | + |
Start bp | 398850 |
End bp | 399449 |
Gene Length | 600 bp |
Protein Length | 199 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 641316081 |
Product | tRNA intron endonuclease |
Protein accession | YP_001581784 |
Protein GI | 161527958 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1676] tRNA splicing endonuclease |
TIGRFAM ID | [TIGR00324] tRNA intron endonuclease |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00000001619 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTTATAT GGAAATCATT TGGTTTTCTT TTCATCATGG AAGAAACCCC TTTGGTCCGT GGCACATTGG TTTCAGATCA AGCCTGTATT TCTGATAAGA AAATGATTCA TGAACTTGAA CTAAAGGGAT ATGGGGAAAT TGAAAAAGAA AAATTCTTCT TAAAACAATT TGAAACTCTT TATCTTCTGT ATACTAACAA ACTAATTCTA AAGAAAGGCA AAAAAGAAAT TGATTTTGAT TTTTTCATGA ATGTCTGTCA AAAGAATGAT TCTGAAATTC TAACTAAATT TTTGATATAC CGTGACCTTA GGAATCGTGG ATATGTTGTA AAAGATGGAT TTGGATTTGG TTCTGACTTT AGAGTGTATG AAAGAGGACA CTTTGGTGAG AAAGGAGCAA AATTTTTGAT ATTTGGTCTA AATGAAGGCC AACAAGAAAA GATGGGTGCA CTACAAAAAA AGATTCAAGA GATTACTCAA ATGGGAAAAG AACCAATAAT TGCAGTTATT GAACGTCGTG GTGAAGTTAT CTATTACAAA ATTAACAAAA TGAACTTTTA TGAAAACAAA GCAAGACTGG AAGAATCATT TAATCTTTGA
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Protein sequence | MLIWKSFGFL FIMEETPLVR GTLVSDQACI SDKKMIHELE LKGYGEIEKE KFFLKQFETL YLLYTNKLIL KKGKKEIDFD FFMNVCQKND SEILTKFLIY RDLRNRGYVV KDGFGFGSDF RVYERGHFGE KGAKFLIFGL NEGQQEKMGA LQKKIQEITQ MGKEPIIAVI ERRGEVIYYK INKMNFYENK ARLEESFNL
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