Gene Nmar_0450 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_0450 
Symbol 
ID5772962 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp398850 
End bp399449 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content31% 
IMG OID641316081 
ProducttRNA intron endonuclease 
Protein accessionYP_001581784 
Protein GI161527958 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1676] tRNA splicing endonuclease 
TIGRFAM ID[TIGR00324] tRNA intron endonuclease 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000001619 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTTATAT GGAAATCATT TGGTTTTCTT TTCATCATGG AAGAAACCCC TTTGGTCCGT 
GGCACATTGG TTTCAGATCA AGCCTGTATT TCTGATAAGA AAATGATTCA TGAACTTGAA
CTAAAGGGAT ATGGGGAAAT TGAAAAAGAA AAATTCTTCT TAAAACAATT TGAAACTCTT
TATCTTCTGT ATACTAACAA ACTAATTCTA AAGAAAGGCA AAAAAGAAAT TGATTTTGAT
TTTTTCATGA ATGTCTGTCA AAAGAATGAT TCTGAAATTC TAACTAAATT TTTGATATAC
CGTGACCTTA GGAATCGTGG ATATGTTGTA AAAGATGGAT TTGGATTTGG TTCTGACTTT
AGAGTGTATG AAAGAGGACA CTTTGGTGAG AAAGGAGCAA AATTTTTGAT ATTTGGTCTA
AATGAAGGCC AACAAGAAAA GATGGGTGCA CTACAAAAAA AGATTCAAGA GATTACTCAA
ATGGGAAAAG AACCAATAAT TGCAGTTATT GAACGTCGTG GTGAAGTTAT CTATTACAAA
ATTAACAAAA TGAACTTTTA TGAAAACAAA GCAAGACTGG AAGAATCATT TAATCTTTGA
 
Protein sequence
MLIWKSFGFL FIMEETPLVR GTLVSDQACI SDKKMIHELE LKGYGEIEKE KFFLKQFETL 
YLLYTNKLIL KKGKKEIDFD FFMNVCQKND SEILTKFLIY RDLRNRGYVV KDGFGFGSDF
RVYERGHFGE KGAKFLIFGL NEGQQEKMGA LQKKIQEITQ MGKEPIIAVI ERRGEVIYYK
INKMNFYENK ARLEESFNL