Gene Nmar_0449 details

Gene Information

• Locus tag: Nmar_0449
• Symbol: rpl10e
• ID: 5772952
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: -
• Start bp: 398278
• End bp: 398787
• Gene Length: 510 bp
• Protein Length: 169 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 641316080
• Product: 50S ribosomal protein L10e
• Protein accession: YP_001581783
• Protein GI: 161527957
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0197] Ribosomal protein L16/L10E
• TIGRFAM ID: [TIGR00279] ribosomal protein L10.e

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 7
• Fosmid unclonability p-value: 0.0000000174136
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCATGGAG CCAATTACAG AGAAGGAAAT GGCCAAGTCT TTACCAGAAG AAAGTACATC 
AAAGGTAAAC CACAAATCAA AATTGCAAAA TTTCAAGGTG GTAAAAGAGG AACTTACCAA 
TATTGTGTAC AATTATGCAT TAATGAAAAA ATGCAGTTAA GACATATGGC AATTGAATCA 
ACAAGATTGG CAGCAAACAA AACACTAGAA AAAACAACTG GTGAGTCAGG ATACTATTCC 
AGACTTAGAA TTTATCCACA CAACATGTTA AGAGAAAATA AACAAATTGC AACTGCAGGT 
GCAGACAGAA TTTCAGAAGG AATGAGAAGA GCTTGGGGAA AAGCAACCAG TTTAGGTGCA 
AGAGTAAGAG AAGGTCAATG CATTATGGAA CTTTACGTTA ATGGTGATGC ACATTTAGCA 
GCAGCAAAGA AATCACTCAA AAGTGCATGT GTAAAATTAC CAGGAACACC AACAATCAAA 
GTTCTTGATT GGAATAAACC ATCACCATAG 

 

Protein sequence

MHGANYREGN GQVFTRRKYI KGKPQIKIAK FQGGKRGTYQ YCVQLCINEK MQLRHMAIES 
TRLAANKTLE KTTGESGYYS RLRIYPHNML RENKQIATAG ADRISEGMRR AWGKATSLGA 
RVREGQCIME LYVNGDAHLA AAKKSLKSAC VKLPGTPTIK VLDWNKPSP